| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1406 |
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| Symbol | |
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| ID | 5538879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1798922 |
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| End bp | 1800178 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893543 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001431519 |
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| Protein GI | 156741390 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0100281 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGGGC TTTTTGTCGC CAAAAACGGA CAAGAAAACG AGATGTTGTC TCTCGAAGAA
CATCGAAAGG GCGTTTCCGA CGCTCCTGCC ACTCCTGAAG AACGCCTCGC CGAACTGCGC
TTCTGCCAGC AGACCGGTCG GTTGCGCGAC TGGCAGCGAC CCATCGCCGA AACAATGCGC
CGCGCCGGTC TTGGCAACGG GTACGCCATT GCAGAATGGT CGGCGATTGC CTGGTACGGT
CCGCTCGACT CCTGGCTGCA CCCCGGATCG CGCGTGTCCG ACATGTTTAT CGACGGACCG
GATCACGCGA TGGTGGTCGT TGAGGACGGG AACCGTACCG ACACTGGCAT CCGCGTCTGC
GACGAGTGGT TGCGCTGGAC GCAGCGCCAA TTGGCGCTGC GGGCTGGATT TGTCACCGCC
GATCATCCTG ATGATTGGCG CAGTGACGAT GGACGAGTCG TTCACGCGCT CTACGGCACA
GCCGACCAGC GGCTGCGTTT TGCCATCACC CGCCCACCAT ACACCCCGGA CGGCGCTACA
GTCGCTGTGC GCGTCCTCCC TGCGCGTTGG CAAACCATCG ATGATCTCGT GCAACAAGAG
ACGGGCGTCC TTCCCCGTGA AGCCGCCGAA CTGTTGCTCG AAGCCATTCG GCGCGGCGTC
ACGCTTCTGA TCGCTGGCGG CGCGGGCAGC GGTAAGACAA CCCTCACGGC AGCGCTGCTT
CAGGCAATTG CTGCTGAGAA GCGCATCATC ATCATCGAAG ACGCTCGTGA ACTGCCGCTG
CCGCCCTATG GAATGGCGGT GGAAGTTCTG CGCAGCCGGA GCAGTTTTGC CGGTTGTGTG
CGACTGACGC TGCGCCAGCG CCCCGATCTG ATCGTCCTTG GGGAAGTCCG CGGTCCCGAA
GCCCTGGCGA TGCTCGAAGC CGCTGCGACC GGGCATCCCG GCATCTGCAC GATCCACGCG
CCAGATGCGC TCACTGCACT GCGCAACCTG GAGCGGTTCG CCACACTCGA CGGACTGGCA
TCACCGGGGA TCGTGCGCGG ACTGATGACG AGTGGCGCCG CACCGTTGAT TGCGCTCCAC
ATCGGAACCT ATGGCGGGCG CCGGCGTGTC GGGCAGATCA TCGAGGTGAT CGTCACCAGT
GGCAGTCAGG CAGGCGAAAC TCTGCCGCAC AACACCCTGT TCGCCTTCAA TCCTGCCACA
AACCGGCTCG AACGGAAATA CCCCGTCCAG GGCGCGTGGG GCAAGGGTCG GCTGTAG
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| Protein sequence | MDGLFVAKNG QENEMLSLEE HRKGVSDAPA TPEERLAELR FCQQTGRLRD WQRPIAETMR
RAGLGNGYAI AEWSAIAWYG PLDSWLHPGS RVSDMFIDGP DHAMVVVEDG NRTDTGIRVC
DEWLRWTQRQ LALRAGFVTA DHPDDWRSDD GRVVHALYGT ADQRLRFAIT RPPYTPDGAT
VAVRVLPARW QTIDDLVQQE TGVLPREAAE LLLEAIRRGV TLLIAGGAGS GKTTLTAALL
QAIAAEKRII IIEDARELPL PPYGMAVEVL RSRSSFAGCV RLTLRQRPDL IVLGEVRGPE
ALAMLEAAAT GHPGICTIHA PDALTALRNL ERFATLDGLA SPGIVRGLMT SGAAPLIALH
IGTYGGRRRV GQIIEVIVTS GSQAGETLPH NTLFAFNPAT NRLERKYPVQ GAWGKGRL
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