| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1352 |
|---|
| Symbol | |
|---|
| ID | 5538824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1730080 |
|---|
| End bp | 1731354 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640893489 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001431466 |
|---|
| Protein GI | 156741337 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAGA CGTATGCCGT GCGTATCGCC ACGCTGGGAT TGATGGTCAT CTCGGCGATG
TTACAGGCGC GTCTGCTGGG TCCCGAAGGC AAAGGACTGC TGGCTGCAAC ACTCTCGTGG
TCGGCGTTGA TCGGCGGTAT CACGCTGCTT GGTTCAGATA GCGCAAGCAT CTACTTCGTT
GCGCGCACTG CGCAGCATAC GCGGTGGATG ATACGCGCCG GGCTGATGTA TGCGGTTGGC
ATCGCTTTGA TTGCGCTCGT ATTGCCTGGG CTTCAGATCA ATACACCGAT AGACCAACAA
CTGATGCTAT CGGTTGCGCT GCTGACGCCG ATTCTCGTCT TGACGGCGCT GTTCAACGCA
ATCTGCGTTG GATTGAACCG GATACGGTTG AGCAATGCTC TCAATGCTGG TTCTGCGTTG
TTGTACGTTC TGGCGCTTGC TGCCCTATCT ATGGCGCACG TTGACCAATT CGAGCCGGTT
ATGGCGACTG TTCTGGGAGT GCAGGTTGCG GTTCTGATCC TTTTCACAGC ATCCCTGCGT
CATTTGAGCA GCGCCGACTA TGTTGCGCCA GATCTTTCGG CATTGGTGCG GTACTCGCTG
CAATCGTTCC GGGGGAACCT TGCCGGTCTG CTGTTTCTGC GCAGCAGCCT GATCATCGTG
AGCGGCATGG CGCCGATAGC ACAGGCTGGC ATCTTCTCGA TTGCGGTCGT CTTCGCGGAT
GTAGTGACGA TGCTGCCCAA TACGCTCATC AACATTCTGC TGCCACGCCT TGCGGGGCAA
AGCCCGGCGT TCGTCGCCCG GCGCGTCGCC GACGCTGTGC GTTACGGCGC TGTCGCGACA
CTTGCACTGG GACTACTGGT TGGAGGTTGT GCTTTTGTGG TTATTCCATT CGGATTTGGT
GAAGGGTTTC GTTCGGCGGC GGCGGTTGCG CTCGTTCTCT GCACCGGTGC GGCGCTCGGC
GCACCCGGCA TGATCCTGTC ACTCTATTTC AACGCAATCG AACAACCGGG GACGCCGGCC
AACGCTGCAT GGATCGGGTG CGGCGTTTTG ATCGCCGGTT CACTGGCGCT GGCGCCGCTC
TTCGGGGCAA TGGGGGCGGC ATTGGCAGTG GTCATTGCAC GGACGACGAT CACGATGGTG
ATGGCGGTAC GTTTTTGTCG CGCCAGCAGT CTGGGCTGGC AAACCCTTCT GACGCTCCAG
GCGGCTGATC TGATAAAGAG TGAACGCAAG ATTTATGCCA TCTATGAGCA GATTGTCCGC
ACTCGTCGCG CCTGA
|
|---|
| Protein sequence | MIETYAVRIA TLGLMVISAM LQARLLGPEG KGLLAATLSW SALIGGITLL GSDSASIYFV
ARTAQHTRWM IRAGLMYAVG IALIALVLPG LQINTPIDQQ LMLSVALLTP ILVLTALFNA
ICVGLNRIRL SNALNAGSAL LYVLALAALS MAHVDQFEPV MATVLGVQVA VLILFTASLR
HLSSADYVAP DLSALVRYSL QSFRGNLAGL LFLRSSLIIV SGMAPIAQAG IFSIAVVFAD
VVTMLPNTLI NILLPRLAGQ SPAFVARRVA DAVRYGAVAT LALGLLVGGC AFVVIPFGFG
EGFRSAAAVA LVLCTGAALG APGMILSLYF NAIEQPGTPA NAAWIGCGVL IAGSLALAPL
FGAMGAALAV VIARTTITMV MAVRFCRASS LGWQTLLTLQ AADLIKSERK IYAIYEQIVR
TRRA
|
|---|
| |