Gene Rcas_1344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1344 
Symbol 
ID5538816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1721849 
End bp1722529 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content64% 
IMG OID640893481 
Producthexapaptide repeat-containing transferase 
Protein accessionYP_001431458 
Protein GI156741329 
COG category[R] General function prediction only 
COG ID[COG0663] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 
TIGRFAM ID[TIGR03570] sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.966213 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGTG TTCTGATCAT TGGCGCCGGC GGGCATGCGC AGGTGGTCGC CGACATTCTG 
CTGCGCATGC ACGAGATGGG CGCCGACCTG ACACCGATTG GTTTTCTCGA CGATAATCCA
CATTTGTTCG GTGAGTGGCG ACTCGGATTG CCGATCCTGG GTCCGCTTGC CTCTATCGAT
GCCGTCGATC ACGACTGCGT CGTGATCGGC ATTGGCGACA ATCGGACGCG CCGGGCGATC
TACGAACGTC TGACAGCGTG CGGCGAGCAG TTCACTGTGG CATGTCACCC GACAGCGATC
GTCGCACGCG ACGCGGTTAT TGGTGCGGGG ACGGTCATCG CGGCGCGGGC AGTCGTGAAC
GCTGGAGCAC ATATTGGCAT GAATGTCATC CTCAACAGCG GTTGCATTGT CGAACACCAC
AATCGCATCG GCGCCCATGC TCACATTGCG CCAGGCGCAA CCCTTGGCGG CGCCGTGACT
GTCAGCGAAG GGGCGCTGGT GGGCATTGGC GCGACAGTGC TGCCGCAGCG CGCGGTCGGT
GCGTGGAGTG TGGTCGGCGG TGGCGCAGTG GTAACATCGG CAGTGGACGA TAACCAGGTA
GTCAGCGGCG TCCCTGCGCG TCCACACCTG GCGTCGCACC ATCTGATCCC GGCGCGACGT
CGCGCGCGTG TCGGGGTGTG A
 
Protein sequence
MKRVLIIGAG GHAQVVADIL LRMHEMGADL TPIGFLDDNP HLFGEWRLGL PILGPLASID 
AVDHDCVVIG IGDNRTRRAI YERLTACGEQ FTVACHPTAI VARDAVIGAG TVIAARAVVN
AGAHIGMNVI LNSGCIVEHH NRIGAHAHIA PGATLGGAVT VSEGALVGIG ATVLPQRAVG
AWSVVGGGAV VTSAVDDNQV VSGVPARPHL ASHHLIPARR RARVGV