| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1300 |
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| Symbol | |
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| ID | 5538772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1673372 |
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| End bp | 1679380 |
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| Gene Length | 6009 bp |
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| Protein Length | 2002 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640893438 |
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| Product | alpha-2-macroglobulin domain-containing protein |
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| Protein accession | YP_001431415 |
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| Protein GI | 156741286 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2373] Large extracellular alpha-helical protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.64211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.760951 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCCGC TCTATCGCCG GTTTGTATTG CTGATGGTAT GCGTGACGAT CCTTGCCGCG
TGCGGTAGTC CGCGCCCGCA GCCAACACCG ACCCCCGTGA CCGCTCAACC AACCCCGGTT
GCGCCACGAC GCGATATTCC ACAACCGCCA ACCCAGGCGG CGCCGACCCT GGTGGCCCGT
TCACCTGAAC CGGGGCAGGC GCTCGATCCC GGCGCACCGG TTGAATTGGT CTTCGACCGC
CCCATGGACC GCGCATCGGT GGCGGCAGCC CTGACCGTCG CCGGAGTAAC CGGCGTAGTG
GAATGGCCCA ATGCGCGCAC CGTTCGTTTC GTGCCGGGCG CACCGCTCAA ACGCGCTTCC
ACATATGAAG TCATGCTGCG CGAAACGGCG AAAAGCGCCG ATGGCATACC CCTGGCGGCG
CCGGTGCGCT TCCGCTTCGC AACCGCAGGC TTCCTCGAAG TCGGGCAGGT GATCCCTGCC
GACGGCGCCG CCGACGTGCA GCCCAATGCG ACTATCACCG TCTTTTTCAA TCGTCCTGTC
GTTCCACTGA CGGCAATCGA GATGCAGACG AACCTGCCGC AGCCGCTGAC GTTCGACCCG
CCAATCGCAG GGCGCGGAGA GTGGCTGAAT ACGGCGATCT ACACCTTCAT CCCTTCAGCG
CCGCTCGCCA GCGGCGCCAC GTACACCGGA CGCATCGCCG CCGGGCTGAC CGATGTAACC
GGGAATCCGC TCCCGTCGGA GTATACCTGG CGCTTTACCG TCGCTCGTCC GCAGGTGGTG
ACGATCAATC CTTTCGATGG CGCGACCCTC GTGCCGCTGC AACCATCCAT CACGCTGCGC
TTCAATGTGC CGGTCGATCC CGCCTCTGCG CGCGCAGCGT TTCGTCTGCG CGGTTCTGAT
GGCGCCGACA TCCCCGGCGA TCTCCAGGTC ACCGACGAGA CGCTGGTCTT CACACCGGCG
CAACGGCTGG AATTTGACAC GCGCTACACG GTTGAGGCGG CTGCCAGTCT GACCGGTATT
TCCGGCGGGC TTGGCATGGC GAATGATTTC AGCGCAACGT TCCAGACGGT TCCTCGCTTG
CGCATTCTGG AAACCGATCC GCGTGATGGG GAGACGAATG CACGCCGCGG CGGGTTGACG
ATCCGCTTCA ACGCCCCCGT CGATCCGGCG ACCGTATTGC CGAATGTCGC CATCACGCCG
CAACCAACGG AGGTGTACAC CTATTTCTAC GACACGACGT TCAATCTCAG TTTCGATACA
CGCCCTTCGA CGGAATATTC GGTTGCGATC GGACCGGACA TCGCCGATCC CTACGGGAAT
CGCACCGGTC AGTCGCTAGC GGTGCGCTTC CGCACAACGC CGCTTGAACC GCAGGTCTAT
CCATTGACCC CTGGTTTCAT CACGACATTC GACGCCAACC GCGCGCCGCG CATTGCGTTA
ATGGCAACCA ATGTCAATAA TGCATCACTG GCGCTCTATC GTCTGCCCGT CGAGGCGTTG
CTGCGCCGTG AGATTCTCGG ACCTGACGGC GTCTCCCCAC CGTCTGGCGC GACGCTCGTG
CGCCGCTGGC AGGCGCAGTT CAGTGTGCCG CGCGATGAAC CAACACCGGT GCGCATTGAT
CTGGTCGATG GGGGGGGGCG CCTCGATCCT GGCTTGTATC TGCTGTTGCT CGATCATCCT
TCCGGCTATC CCGAAACGCG GGTGCTGGCG GTATCACCAT TGCATCTGAC ACTGAAGGCG
GCGGAGCGCA CTGCGTTGGT GTGGGCGAAT GATCTGACGA CCGGTGCGCC GGTGTCTGGT
CTGGCGCTGG AATTGTTCGA CGATCAGGGC GCATCACTGG GCACAGCGAC TACTGACGCA
AATGGGGTGG CGACGACGAC TCTCAACCGC ACCGAGTACC GTGGGATGGT CGCAGTCGCG
CGACAGCCGT TCGCAATCTT CGGCGCAGAT TGGGGAACCG GCGTCACTCC GTGGGATTTC
AGCCTCCCGG CGTCGTTCGA CCTGCCAGAA GTGACTGCCT ATGTCTACAC CGACCGACCA
ATCTACCGTC CCGGTCAGCG GGTGTGGTTC AAGGGGGTCG TGCGCGCCGA GGACGATGTG
CGCTATACCC TCATGCCGGG GTTGAACACG GCACAGGTTG CCGTTTACGA TGCAGCCGGT
GAATCGATCA TTCAGCAACC GGTGAGTCTG AATCCGAACG GCGCCTTCGA CGGCGGGTTC
ATGCTGGCAG CAGGCGCGCC GACCGGTCAG TACGCCCTCA GTCTGAATGT TGGCGGTCGC
GAGTTCCGTT TCCCCTTCCA GGTCGCTGCC TATCGTCCCC CAGAGATCGA GGTGACGGTG
ACGCCGCGCG CTGCCGGGAT TATGCGCGGT GCACCGACAG AAGCAACAGT GCGCGCCGCT
TATTTTTTTG GCGCGCCGGC CGCAAACCTG CCGGTGCAGT GGAATGTGCT GGCGGAACCA
TTCGCTCCCG CGCCTGATTG GGCGGGCAGG TACACCTTCG ACGAGTCTGG CGATGTGTGG
GTCTGTCGCT TCTGCTGGTG GATTCCCGCT CCGCCGCCGC AACCGATCCT CTCCGGCAGC
GCCACAACCG ATGCGCAGGG ACAGGCGATC ATCAGCCTGC CGGGTGAATT GCGCGACCCG
GAAGGCAACG TTATCACCCG CAGCGCGCGC CTGACGGTCG AGGCGACGGT CACCGGGCGC
GATAATCAGG CAATCAGCGG GCGCACTGCT ATCGTCGTGC ATGCCAGCGA CCTGTACGTC
GGGCTGGCGC CGCGCGCGTA TGTCGGCAGG GCAGGCGCGG CGCAGCAGAT CGACCTGGTG
ACCATCGACA CGCGCGGCAA TCGCCTGGCA AGCCGCGCGG TCGAAATCGA ACTGGTGCGC
ACCACCTGGG AAAATCGCTT CGTGCAGGAC GACGCTGGCG GACGCTGGGA GTCGCGTGAG
GTGCGCGAAC CTGTCGGCAC GCAGACGGTC ACAACCGACG CGAATGGCGA GGCGGTCGTT
TCGTTCACTC CCGACAAAGG TGGCGCCTAC CTGGTGCTGG CGCGCGCACG CGATGCTGGC
GGGCGCGAGG CGCGCTCCTC GCTGTATGTC TGGGTCTACG GCGGCGATGC GCTCTGGCTG
CGCGAGAATA ATGATCGCAT CAACCTGATA GCCGACAAAA GCGAGTATCG CCCCGGCGAA
ACAGCAACGA TCCTCATCCC CTCGCCGTTC ACTGGAACGC ATTGGGCGCT GCTGACCGTC
GAGCGCGGCG GCGTCTTGAG CCACGAGGTG CGCCAGGTCA GCGGCGGCAG TCTGGTCTAT
CAACTGCCAA TCACGGCTGA TCACGCGCCG AATATCTTTG TTTCGGCAGT GCTGTTTGCG
CCGCCGGACG GCAGCGGCGC GCCTGCCGAT TTCAAGGTCG GCGTCCTGCC ACTCACCGTT
GTGCCGACTG CGCAGATGCT GCGGGTTGAA GTGACCACTG CGACACCGCA GGCAGCACCC
GGCGACGCAG TAACCTTCGA TGTGCGCGTG ACCGACACAA ACGGCGCGCC GGTAGCGGCG
GAACTGTCGC TCGACCTGGT CGATAAAGCC GTGCTGTCGC TCCAACCACG CGAGCCAGAT
GCCATTGTCC AGGGGTTCTA CGGTCGCCGT CCGCTGGGGG TGTTCACCAG CGCCGGTCTT
TCGGTTGCCG CCGAGCGCTT CGAGCGTTTG CTGGACGAAG CGCAGCGCAA TGTGCCGCCG
GGCGCAGGCG CGGCTGGACC AGAGACCGCT ATCCCTATGG TCGGGGCAAC GCCAACGGCG
CCAGCCGCTA TGCCTGCCGA GGCGATGCCC GCGCGCACCG GCGATGCCGC ACTTCAGCAG
GGATTGACTA TTCGCCAGGA GTTTGCCGAC ACCGCGTTCT GGCAGGCGGT TGTGACCACC
GACGCTGGCG GGCGCGCGAC GGTGCAGGTT TCGCTGCCTG ATAATCTGAC GACCTGGGTG
ATGCGCGGCG TGGCGCTCAC AATGGATACG CGCGTCGGTG AAGGAACTGG TGAACTGGTC
AGCACGAAGC CATTGCTTGT GCGCCCGGTC ACGCCACGCT TCTTTGTCGT TGGGGATGTG
GTAGAACTGG CAGTAAACGT CAGCAATCTT ACAAATACGC CCATGATGAC AACGGTGACC
CTGAGCGCCG ATGGGGTTAC GGTCACCTCG CCGATCACGC AGACGATCCA GGTTCCGGCG
AATGGCGAAG CCTCGGCAGC CTGGCAGGTA ACGGTTCTTG ATGGAGAGTC AGTCGATCTG
GTATTCAGCG CCGTCTCCGG GCAACTGAGC GACGCGGCGC GACCCCGAAT CGCAACCGCG
CCAGACGGGC GCATTCCGGT CTACCGCTAC AGCGCGCCGG AGACCGTGGC GACCGGCGGA
CAGATCGACC GGGCAGATGC GCGCGTCGAG GCGGTAGCGC TGCCGCCGAA TGTCGATGCG
CGCCTGGGAG AATTGCGCAT CCGGCTCGAT CCTTCGCTGG CGGCCAGCGT ACTCGACGGT
CTGACGGCTT TGGAAGAATA TCCGTATGTC ACCGTCGAGT CGACCGTCTC GCGCTTTGTG
CCGAATGTCG TGGCGCTGCG GATGCTCCGC CAGCTCGGAG TGACAAACAC CGAACTGGAG
GCGCGCCTGC CGACCCTGGT CGCTGATGCG CTCGACCGGC TCTCCCTGTG GCAGAATGCC
GACGGCGGAT GGGGCTGGTG GGCAGACGAT GAGAGCAATC CATACATCAG CGCGTATGCG
GTATTCGGCA TGCTGCGGGC GCGCGAAGCG GGCTTCACCG TGCGCGACGA CACGCTGGCG
CGCGGAACGG AGTATCTCGC TGCGCAACTC GCCGCCGACG CCGATGTGCG CACAGCACAG
CAAGCGAACC GGCAGGCATG GCTGCTCTAC GTGCTTGCCG ACGGCGGCAG ACCGGATCGT
GGGCGGATGG ACGCGCTCTA CGGCAACCGT GAGCGTCTTG GCGTGTACGG CAAGGCGTTG
CTGGCGCTGG CGCTCCACCG CGTCGATGCT GGCGATGCGC GGCTGAAGAC ACTCCTTTCG
GACCTGAACA ATGCCGCAAT TGTCAGCGCC ACCGGCGTCC ATTGGGAGGA AGCCGCGCGA
GACTCCTGGG CATTCAGCAG TGACACGTGC AGTAGCGCGA TTGCGCTCCA GGCGCTTGTG
CGACTCGACC CGCAGAACCA GATTATTCCC AACGTCGTGC GCTGGCTTAT GGTTGCTCGC
CGTGGCGACA TCTGGCTCAC GACCCAGGAA TCGGTGTGGG GACTGCTGGC GCTGACCGAC
TGGATGGCAA CGACCGGCGA ACTCAACGGC GCCTATGACT ATGCTGTCTG GCTGAATGGT
AATGAGCGCA TCGCCGGGCG CATCGACGCC ACCAACGTCA TGTCGGCGAC GGTGGTGCGT
GTGCCGACGA CTGAACTGCT GATCGGCGAC CCATTGCTGG TGGCGGTGGG GCGCAGCGAA
GGAGCAGGTC GGCTGTACTA CACAGCGCAT CTGAACCTGG CGCTGCCAGC CGATCAGGTG
AAGGCGCTCG ACCGGGGCAT CGCCGTGACG CGACGGTACG TGGCGGCGGA TTGCACGGAC
GGACCACGTT GCCCGACGTT GACCAGCGTC AAAGCGGGCG ACATGGTGCG AGTCGAACTC
TCGATTGTAG CCGAGCGCGA TCTCTACTAC TTCCAGATCG AAGATCCGCT CCCCGCTGGC
GGCGAAGCCA TCGACCCGAA CCTGGCGACG ACTGTGATCG CTTCAGATAG CGGACCAACG
CTGCGACCGG CGCCGGATGC CGCGACGCCG TACTGGTGGT GGTGGCGCTG GTACGACCGG
GTCGAGCTGC GCGACGAAAA GGTTGCGCTG TTCGCCGATT ACCTGCCGCG CGGCGCGTAT
CTCTTCAGTT ACACCTTCCG CGCCGTGCAA CCGGGCGAAT ACCGCGTCAT TCCGACACTT
GCGCAGGAGA GTTTCTTCCC CGAAGTCTTC GGACGAGCGG ATGGGCAACT GTTCGTCATC
ACGCGGTAA
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| Protein sequence | MPPLYRRFVL LMVCVTILAA CGSPRPQPTP TPVTAQPTPV APRRDIPQPP TQAAPTLVAR
SPEPGQALDP GAPVELVFDR PMDRASVAAA LTVAGVTGVV EWPNARTVRF VPGAPLKRAS
TYEVMLRETA KSADGIPLAA PVRFRFATAG FLEVGQVIPA DGAADVQPNA TITVFFNRPV
VPLTAIEMQT NLPQPLTFDP PIAGRGEWLN TAIYTFIPSA PLASGATYTG RIAAGLTDVT
GNPLPSEYTW RFTVARPQVV TINPFDGATL VPLQPSITLR FNVPVDPASA RAAFRLRGSD
GADIPGDLQV TDETLVFTPA QRLEFDTRYT VEAAASLTGI SGGLGMANDF SATFQTVPRL
RILETDPRDG ETNARRGGLT IRFNAPVDPA TVLPNVAITP QPTEVYTYFY DTTFNLSFDT
RPSTEYSVAI GPDIADPYGN RTGQSLAVRF RTTPLEPQVY PLTPGFITTF DANRAPRIAL
MATNVNNASL ALYRLPVEAL LRREILGPDG VSPPSGATLV RRWQAQFSVP RDEPTPVRID
LVDGGGRLDP GLYLLLLDHP SGYPETRVLA VSPLHLTLKA AERTALVWAN DLTTGAPVSG
LALELFDDQG ASLGTATTDA NGVATTTLNR TEYRGMVAVA RQPFAIFGAD WGTGVTPWDF
SLPASFDLPE VTAYVYTDRP IYRPGQRVWF KGVVRAEDDV RYTLMPGLNT AQVAVYDAAG
ESIIQQPVSL NPNGAFDGGF MLAAGAPTGQ YALSLNVGGR EFRFPFQVAA YRPPEIEVTV
TPRAAGIMRG APTEATVRAA YFFGAPAANL PVQWNVLAEP FAPAPDWAGR YTFDESGDVW
VCRFCWWIPA PPPQPILSGS ATTDAQGQAI ISLPGELRDP EGNVITRSAR LTVEATVTGR
DNQAISGRTA IVVHASDLYV GLAPRAYVGR AGAAQQIDLV TIDTRGNRLA SRAVEIELVR
TTWENRFVQD DAGGRWESRE VREPVGTQTV TTDANGEAVV SFTPDKGGAY LVLARARDAG
GREARSSLYV WVYGGDALWL RENNDRINLI ADKSEYRPGE TATILIPSPF TGTHWALLTV
ERGGVLSHEV RQVSGGSLVY QLPITADHAP NIFVSAVLFA PPDGSGAPAD FKVGVLPLTV
VPTAQMLRVE VTTATPQAAP GDAVTFDVRV TDTNGAPVAA ELSLDLVDKA VLSLQPREPD
AIVQGFYGRR PLGVFTSAGL SVAAERFERL LDEAQRNVPP GAGAAGPETA IPMVGATPTA
PAAMPAEAMP ARTGDAALQQ GLTIRQEFAD TAFWQAVVTT DAGGRATVQV SLPDNLTTWV
MRGVALTMDT RVGEGTGELV STKPLLVRPV TPRFFVVGDV VELAVNVSNL TNTPMMTTVT
LSADGVTVTS PITQTIQVPA NGEASAAWQV TVLDGESVDL VFSAVSGQLS DAARPRIATA
PDGRIPVYRY SAPETVATGG QIDRADARVE AVALPPNVDA RLGELRIRLD PSLAASVLDG
LTALEEYPYV TVESTVSRFV PNVVALRMLR QLGVTNTELE ARLPTLVADA LDRLSLWQNA
DGGWGWWADD ESNPYISAYA VFGMLRAREA GFTVRDDTLA RGTEYLAAQL AADADVRTAQ
QANRQAWLLY VLADGGRPDR GRMDALYGNR ERLGVYGKAL LALALHRVDA GDARLKTLLS
DLNNAAIVSA TGVHWEEAAR DSWAFSSDTC SSAIALQALV RLDPQNQIIP NVVRWLMVAR
RGDIWLTTQE SVWGLLALTD WMATTGELNG AYDYAVWLNG NERIAGRIDA TNVMSATVVR
VPTTELLIGD PLLVAVGRSE GAGRLYYTAH LNLALPADQV KALDRGIAVT RRYVAADCTD
GPRCPTLTSV KAGDMVRVEL SIVAERDLYY FQIEDPLPAG GEAIDPNLAT TVIASDSGPT
LRPAPDAATP YWWWWRWYDR VELRDEKVAL FADYLPRGAY LFSYTFRAVQ PGEYRVIPTL
AQESFFPEVF GRADGQLFVI TR
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