Gene Rcas_1258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1258 
Symbol 
ID5538730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1625866 
End bp1627965 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content64% 
IMG OID640893396 
Productpolysaccharide deacetylase 
Protein accessionYP_001431373 
Protein GI156741244 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.252566 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGTCAG CCTCGGATCG AACCGCGATC AAAACCATGC CGGTTGTTGT CTTCCACATC 
GCCATTGGTC CACTCGATGA CGATGGACGA TGCCCGGTCC GCGCGCGCGT CAACGGACGT
GCCGCCGTGT CGGAGTTGCA CCTGGCAGGA TCGCTGTTCG ACCTGGGACA TCAGGCGCTC
CATGCCGGTG CGCAGCGGAT CGCAAACATT CCTGATGTCG GGCGGGCGCT GGGTCGAGCG
CTGTTTACGC TGCCGATTCG CACGCTCTTG CTCGATGCTG CGCGTTCTGC CGCTGCGGAT
GGCGCTCGCC TTCAGGTGCG GTTGCAGATC AATACACCGG AACTTGCCGC GCTTCCCTGG
GAGTATCTGT CACTGGGCAG CACACATGTC TGGACGCCAG CACTGCGCGC CGATTATGCG
CTGGTGCGTG CAGGAAGGTG CGTCTCGCCG CCACAATCAC TGCCCCTCCG CGAACCGCTG
CGGGTGCTGG CGATTGCGTC GCCCGGCAAT GCGCACTGCC TGGATGCGCT CGAACGCGCG
CTGACGCCCG GCATTCGCGC CGCTCGGATC GATCTGCGGT CAGTGCCGGA TGCCTCTCCC
TCGACATTGC AGCGGGCGCT GGTGGAAGAA ATGCCCCACG TGCTGCACCT GGCGGCGCGT
GTTGTGCTGA CGCCCGATCG GCGTCTCGAA CTGGATCTGA GTGGCGCACT CGACGCCGGC
GACCTGGTCG ATCTGCTGGC AGATGCGGCA AATCTGCGGT TGGCAACGCT GACCGGCGGC
GAAGGAGACA GGCGGGCGCT CGATATTGCG CCAATGCTGT GTGCAGCGTT GCTGATCGAT
GAGCGCCTTC CTGCCACAAT TGCGTTCGGT ACACCGCTGC CGGCGGACCA TACGGCTCGG
TTTGCGGCGC TCTGCTACGA TCAGTTGGCG ATGGGAGCGC CGGTCGATCT TGCAGTGACG
GTCGGGCGCG TGGCGCTGGC GCGGATCGGC GACCTGTGGG GAGCGCCGGT GCTGCGGGTT
GCGCCTGATA CCGGTGTGCT GTTCCAACCC TTGCCGCGCC GCGCCGCGCG CCCGCGCTCC
GCAAACCGCC CGCTTCCTTT CGTTGCGGCA ACCGCCGTCG GTGTTGCGCT GATCCTTGGC
GGGTATCTGT TCCGCCCATC GCCATCCTTG CCACCGGAAG CCACGTATGC GCGTCAAGTT
ACGCCGCCAA CGGTGCGTGT TCGGGAAACA CCCACCTCCG GGCATCCGAG CATTCTGGCA
GCGCCCCTGT CGTTCATCGC GCCATCGGCA ACACCCACGC CCTCCCCTCT GCCGTCGCCA
ACGCCGTTGC CTGCGCCGAT CGGGTATACG GTTCATCGCG TCGCTGCGGG GGAAACGCTG
GACGGCATCG CAGCACGATT GGGAAGTGAT ACAGCAGCCA TTGCCGCACT GAATGCGATT
GACGCCGACG CGCCACTCCG CCCTGAACGA GCGCTGGCGA TCCCGTTGTT CCATCCTGGC
GAAGCGGCAT CCGGGCTGAC GGAACCGGTG CGACGCGGCA ATCCGGCGTC CGGGAAGGTG
GCGCTGACGT TCGATATCGA AATTGACGAT ACAACGCTCT ATGCCATCCT CGATGCATTA
CGACAGCGTC AAGTCAAAGG GACGTTCTTC GTCACGGGGA ACTGGGTCAA ACGCTTCCCC
GATGCAGCAC GCGCCATCGT TGCCGAAGGA AACGAGATTG CCAATCATTC GCTCACGCAT
CCCTACTTCT CACGCATCGG TCTCGACGGG ATGGCGAATG AATTGCGTGA AACCGACCGG
ATTGTTCTGG AGGTCACCGG CCGAAGCACG AGACCGCATT TCCGCTTTCC CTATGGCGAT
TATACCGCGC AGGCGGTTGC AGCAGTTGTG GCGGAAGGAT ACATTCCGTA CCATTGGAGC
GCCGATGATC GAGCGATCCC GGCATGGCTC GACCGCGCCG TCGCTGATCC GGCGTGGGCG
GATGGCGGCA TCTTGTTAAT GCACGGACGG TCGTCAACGG CCGGCATGTT GCCGGGCATT
ATTGATCGTT TGCGCGCTGT TGGACTGGAA CCGACAACCC TGAGCGAAAC CTTGCGATAG
 
Protein sequence
MRSASDRTAI KTMPVVVFHI AIGPLDDDGR CPVRARVNGR AAVSELHLAG SLFDLGHQAL 
HAGAQRIANI PDVGRALGRA LFTLPIRTLL LDAARSAAAD GARLQVRLQI NTPELAALPW
EYLSLGSTHV WTPALRADYA LVRAGRCVSP PQSLPLREPL RVLAIASPGN AHCLDALERA
LTPGIRAARI DLRSVPDASP STLQRALVEE MPHVLHLAAR VVLTPDRRLE LDLSGALDAG
DLVDLLADAA NLRLATLTGG EGDRRALDIA PMLCAALLID ERLPATIAFG TPLPADHTAR
FAALCYDQLA MGAPVDLAVT VGRVALARIG DLWGAPVLRV APDTGVLFQP LPRRAARPRS
ANRPLPFVAA TAVGVALILG GYLFRPSPSL PPEATYARQV TPPTVRVRET PTSGHPSILA
APLSFIAPSA TPTPSPLPSP TPLPAPIGYT VHRVAAGETL DGIAARLGSD TAAIAALNAI
DADAPLRPER ALAIPLFHPG EAASGLTEPV RRGNPASGKV ALTFDIEIDD TTLYAILDAL
RQRQVKGTFF VTGNWVKRFP DAARAIVAEG NEIANHSLTH PYFSRIGLDG MANELRETDR
IVLEVTGRST RPHFRFPYGD YTAQAVAAVV AEGYIPYHWS ADDRAIPAWL DRAVADPAWA
DGGILLMHGR SSTAGMLPGI IDRLRAVGLE PTTLSETLR