Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1258 |
Symbol | |
ID | 5538730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1625866 |
End bp | 1627965 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640893396 |
Product | polysaccharide deacetylase |
Protein accession | YP_001431373 |
Protein GI | 156741244 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.252566 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGTCAG CCTCGGATCG AACCGCGATC AAAACCATGC CGGTTGTTGT CTTCCACATC GCCATTGGTC CACTCGATGA CGATGGACGA TGCCCGGTCC GCGCGCGCGT CAACGGACGT GCCGCCGTGT CGGAGTTGCA CCTGGCAGGA TCGCTGTTCG ACCTGGGACA TCAGGCGCTC CATGCCGGTG CGCAGCGGAT CGCAAACATT CCTGATGTCG GGCGGGCGCT GGGTCGAGCG CTGTTTACGC TGCCGATTCG CACGCTCTTG CTCGATGCTG CGCGTTCTGC CGCTGCGGAT GGCGCTCGCC TTCAGGTGCG GTTGCAGATC AATACACCGG AACTTGCCGC GCTTCCCTGG GAGTATCTGT CACTGGGCAG CACACATGTC TGGACGCCAG CACTGCGCGC CGATTATGCG CTGGTGCGTG CAGGAAGGTG CGTCTCGCCG CCACAATCAC TGCCCCTCCG CGAACCGCTG CGGGTGCTGG CGATTGCGTC GCCCGGCAAT GCGCACTGCC TGGATGCGCT CGAACGCGCG CTGACGCCCG GCATTCGCGC CGCTCGGATC GATCTGCGGT CAGTGCCGGA TGCCTCTCCC TCGACATTGC AGCGGGCGCT GGTGGAAGAA ATGCCCCACG TGCTGCACCT GGCGGCGCGT GTTGTGCTGA CGCCCGATCG GCGTCTCGAA CTGGATCTGA GTGGCGCACT CGACGCCGGC GACCTGGTCG ATCTGCTGGC AGATGCGGCA AATCTGCGGT TGGCAACGCT GACCGGCGGC GAAGGAGACA GGCGGGCGCT CGATATTGCG CCAATGCTGT GTGCAGCGTT GCTGATCGAT GAGCGCCTTC CTGCCACAAT TGCGTTCGGT ACACCGCTGC CGGCGGACCA TACGGCTCGG TTTGCGGCGC TCTGCTACGA TCAGTTGGCG ATGGGAGCGC CGGTCGATCT TGCAGTGACG GTCGGGCGCG TGGCGCTGGC GCGGATCGGC GACCTGTGGG GAGCGCCGGT GCTGCGGGTT GCGCCTGATA CCGGTGTGCT GTTCCAACCC TTGCCGCGCC GCGCCGCGCG CCCGCGCTCC GCAAACCGCC CGCTTCCTTT CGTTGCGGCA ACCGCCGTCG GTGTTGCGCT GATCCTTGGC GGGTATCTGT TCCGCCCATC GCCATCCTTG CCACCGGAAG CCACGTATGC GCGTCAAGTT ACGCCGCCAA CGGTGCGTGT TCGGGAAACA CCCACCTCCG GGCATCCGAG CATTCTGGCA GCGCCCCTGT CGTTCATCGC GCCATCGGCA ACACCCACGC CCTCCCCTCT GCCGTCGCCA ACGCCGTTGC CTGCGCCGAT CGGGTATACG GTTCATCGCG TCGCTGCGGG GGAAACGCTG GACGGCATCG CAGCACGATT GGGAAGTGAT ACAGCAGCCA TTGCCGCACT GAATGCGATT GACGCCGACG CGCCACTCCG CCCTGAACGA GCGCTGGCGA TCCCGTTGTT CCATCCTGGC GAAGCGGCAT CCGGGCTGAC GGAACCGGTG CGACGCGGCA ATCCGGCGTC CGGGAAGGTG GCGCTGACGT TCGATATCGA AATTGACGAT ACAACGCTCT ATGCCATCCT CGATGCATTA CGACAGCGTC AAGTCAAAGG GACGTTCTTC GTCACGGGGA ACTGGGTCAA ACGCTTCCCC GATGCAGCAC GCGCCATCGT TGCCGAAGGA AACGAGATTG CCAATCATTC GCTCACGCAT CCCTACTTCT CACGCATCGG TCTCGACGGG ATGGCGAATG AATTGCGTGA AACCGACCGG ATTGTTCTGG AGGTCACCGG CCGAAGCACG AGACCGCATT TCCGCTTTCC CTATGGCGAT TATACCGCGC AGGCGGTTGC AGCAGTTGTG GCGGAAGGAT ACATTCCGTA CCATTGGAGC GCCGATGATC GAGCGATCCC GGCATGGCTC GACCGCGCCG TCGCTGATCC GGCGTGGGCG GATGGCGGCA TCTTGTTAAT GCACGGACGG TCGTCAACGG CCGGCATGTT GCCGGGCATT ATTGATCGTT TGCGCGCTGT TGGACTGGAA CCGACAACCC TGAGCGAAAC CTTGCGATAG
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Protein sequence | MRSASDRTAI KTMPVVVFHI AIGPLDDDGR CPVRARVNGR AAVSELHLAG SLFDLGHQAL HAGAQRIANI PDVGRALGRA LFTLPIRTLL LDAARSAAAD GARLQVRLQI NTPELAALPW EYLSLGSTHV WTPALRADYA LVRAGRCVSP PQSLPLREPL RVLAIASPGN AHCLDALERA LTPGIRAARI DLRSVPDASP STLQRALVEE MPHVLHLAAR VVLTPDRRLE LDLSGALDAG DLVDLLADAA NLRLATLTGG EGDRRALDIA PMLCAALLID ERLPATIAFG TPLPADHTAR FAALCYDQLA MGAPVDLAVT VGRVALARIG DLWGAPVLRV APDTGVLFQP LPRRAARPRS ANRPLPFVAA TAVGVALILG GYLFRPSPSL PPEATYARQV TPPTVRVRET PTSGHPSILA APLSFIAPSA TPTPSPLPSP TPLPAPIGYT VHRVAAGETL DGIAARLGSD TAAIAALNAI DADAPLRPER ALAIPLFHPG EAASGLTEPV RRGNPASGKV ALTFDIEIDD TTLYAILDAL RQRQVKGTFF VTGNWVKRFP DAARAIVAEG NEIANHSLTH PYFSRIGLDG MANELRETDR IVLEVTGRST RPHFRFPYGD YTAQAVAAVV AEGYIPYHWS ADDRAIPAWL DRAVADPAWA DGGILLMHGR SSTAGMLPGI IDRLRAVGLE PTTLSETLR
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