Gene Rcas_1253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1253 
Symbol 
ID5538725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1621032 
End bp1621799 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content64% 
IMG OID640893391 
Product2-deoxy-D-gluconate 3-dehydrogenase 
Protein accessionYP_001431368 
Protein GI156741239 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCG CGCTCGATCT TTTTCGTCTC GACGGTCGCG TGGCATTGGT CACCGGCGGC 
GATAAGGGGT TGGGGCAGGG AATTGCCATC GCACTCGCGC AGGCTGGCGC AGACGTGGCG
GTTGTCTCGC GTTTGGGGAA TGCTGTCGCT ACCCTCGATG CCATCGCCGC AACCGGACGA
CGCAGCGTTG CACTGACCGC CGATCTGAGC AGCACGGCGC CGGTCGAGGG GGTGGTGAGC
GAAACCATCA CGCGCCTTGG ACGGCTCGAT ATTCTCGTTA ACAATGCCGG GATTATCCGG
CGCGCCCCGG CTGTTGATTA TGGATGGAAC GATTGGCGCG CGGTGCTCGA CGTGAACCTC
GATGCAGTAT GGGCGCTCTG CCAGGCGGCT GGTCGTCCAA TGATCGCCCA GGGTCACGGA
AAGATCATCA ATGTCGCATC CCTGCTCGCT TTCCAGGGAG GCATTCGCGT GCCCGCCTAC
GCCGCTGCCA AGCACGCCGT CGCCGGCCTG ACAAAGGCGC TTGCCAATGA GTGGGCGCAT
CTGGGGGTGA ATGTCAATGC CATTGCCCCG GGCTACATGG TCACCGACAA CACACAGGCG
CTGCGCGATG ATCCTGAACG ATCCCGTCAG ATTCTCGAAC GCATTCCCGC CGGGCGCTGG
GGCGTTCCCG CCGATCTGGC AGGGGCGGCA ATCTTTCTGG CGTCATCCGC CAGCGACTAC
GTGCATGGGC ACGTACTCGT CGTCGATGGC GGGTGGCTGG CGCGGTGA
 
Protein sequence
MSSALDLFRL DGRVALVTGG DKGLGQGIAI ALAQAGADVA VVSRLGNAVA TLDAIAATGR 
RSVALTADLS STAPVEGVVS ETITRLGRLD ILVNNAGIIR RAPAVDYGWN DWRAVLDVNL
DAVWALCQAA GRPMIAQGHG KIINVASLLA FQGGIRVPAY AAAKHAVAGL TKALANEWAH
LGVNVNAIAP GYMVTDNTQA LRDDPERSRQ ILERIPAGRW GVPADLAGAA IFLASSASDY
VHGHVLVVDG GWLAR