| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1253 |
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| Symbol | |
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| ID | 5538725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1621032 |
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| End bp | 1621799 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640893391 |
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| Product | 2-deoxy-D-gluconate 3-dehydrogenase |
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| Protein accession | YP_001431368 |
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| Protein GI | 156741239 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCG CGCTCGATCT TTTTCGTCTC GACGGTCGCG TGGCATTGGT CACCGGCGGC
GATAAGGGGT TGGGGCAGGG AATTGCCATC GCACTCGCGC AGGCTGGCGC AGACGTGGCG
GTTGTCTCGC GTTTGGGGAA TGCTGTCGCT ACCCTCGATG CCATCGCCGC AACCGGACGA
CGCAGCGTTG CACTGACCGC CGATCTGAGC AGCACGGCGC CGGTCGAGGG GGTGGTGAGC
GAAACCATCA CGCGCCTTGG ACGGCTCGAT ATTCTCGTTA ACAATGCCGG GATTATCCGG
CGCGCCCCGG CTGTTGATTA TGGATGGAAC GATTGGCGCG CGGTGCTCGA CGTGAACCTC
GATGCAGTAT GGGCGCTCTG CCAGGCGGCT GGTCGTCCAA TGATCGCCCA GGGTCACGGA
AAGATCATCA ATGTCGCATC CCTGCTCGCT TTCCAGGGAG GCATTCGCGT GCCCGCCTAC
GCCGCTGCCA AGCACGCCGT CGCCGGCCTG ACAAAGGCGC TTGCCAATGA GTGGGCGCAT
CTGGGGGTGA ATGTCAATGC CATTGCCCCG GGCTACATGG TCACCGACAA CACACAGGCG
CTGCGCGATG ATCCTGAACG ATCCCGTCAG ATTCTCGAAC GCATTCCCGC CGGGCGCTGG
GGCGTTCCCG CCGATCTGGC AGGGGCGGCA ATCTTTCTGG CGTCATCCGC CAGCGACTAC
GTGCATGGGC ACGTACTCGT CGTCGATGGC GGGTGGCTGG CGCGGTGA
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| Protein sequence | MSSALDLFRL DGRVALVTGG DKGLGQGIAI ALAQAGADVA VVSRLGNAVA TLDAIAATGR
RSVALTADLS STAPVEGVVS ETITRLGRLD ILVNNAGIIR RAPAVDYGWN DWRAVLDVNL
DAVWALCQAA GRPMIAQGHG KIINVASLLA FQGGIRVPAY AAAKHAVAGL TKALANEWAH
LGVNVNAIAP GYMVTDNTQA LRDDPERSRQ ILERIPAGRW GVPADLAGAA IFLASSASDY
VHGHVLVVDG GWLAR
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