| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1247 |
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| Symbol | |
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| ID | 5538719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1611479 |
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| End bp | 1613590 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893385 |
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| Product | glycoside hydrolase family 13 protein |
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| Protein accession | YP_001431362 |
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| Protein GI | 156741233 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACCA GAGAATCGGC GTCCTGGTAT CAACCTTCTG CCTGGGAGCG CAGCGAAGGC
TCGCCTGTGT CCTTAGGTCC TACGTGGGTT CCGGCAGGTG AAGGGTATAA TTTCGCCCTC
TTCTCACGTC ACGCCACCAG TGTCACCCTG CTGATCTATG GCGCGGACGA TTTCGTGACG
CCGATTTACC GCCATCATCT CGACCCGCGC CGCAACAAGA CCCATCACGT CTGGCATTGC
TGGGTTCCGG CCGCAGCCAT TCCCGGCGGG CGCTACTACG CCTATCGTGT GGATGGTCCC
CGCGCGCCGG AGGAAGGGCA TCGCTTCGAT TCGACGAAGA TTGTGCTCGA TCCATATGCG
CCAGAGGTCT TCTTTCCGCC AGATTACAGC CGGGAAGCGG CGATGCGTCC GGGACCAAAC
GATGGACGCG CGCCGCTTGG CGTGCTGCCG CGCCGCGAGC CGCGATACGA CTGGGAAGGC
GATGTGCGTC CACACCATAC CCACGATCTG ATCGTCTATG AACTGCACGT GCGCGGTTTT
ACTGCGCGCG CCAATTCGGG CGTCGCACCA GAGGAGCGGG GGACGTTCAT CGGGCTGATC
CGCAAGATTC CGTACCTGCT GGAACTTGGG GTGACCGCCG TTGAACTTTT GCCGGTGCAT
CAGTTCGACC CTCAGGAAGG AAATTACTGG GGCTATATGA CCCTCAATTT CTTTGCGCCC
CACAATGGCT ACGCCGTTCA TGATCCGCAC CGTGAATTTC GTGATATGGT CAAGGCCATG
CACGCGGCCG GCATCGAGGT CTGGCTCGAT GTGGTCTACA ACCATACCAG CGAGGGGGAC
GAACGGGGTC CGGCATACTG TTATCGCTTG ATTGATAATC GGGTCTATTA CCTGCTCACG
CCCGACCGTC GTCAGTATAT CAATGCGAGC GGGTGCGGCA ATACGTTACG CTGCGCCGAT
CCCGCCGTGC GCACGCTGAT CGTCGATAGT CTCACTACCT GGATACAGTC CATGCACGTC
GATGGGTTCC GTTTCGATCT GGCATCGATT CTGGCGCGCA ACGAGGACGG GACGATCAAT
CACGAGGATC CGGCGCTCAT TCACGAGATC AGTATGCTCG CCCAACGTCA CGGGGTGCGT
TTGATCGCCG AAGCGTGGGA TATCAGCGCG TACCTTCTGG GACGCGCCTT CCCTGGCATG
ACGTGGCGCC AGTGGAATGG GAAGTTCCGC GATGATGTGC GCGCATTTGT CAAGGGTGAT
CCCGGCAAGA TCGGCGATCT GATGTGTCGA TTGTATGGCA GCGACGATCT GTTCCCCGAT
ACGCTGGCTG ATGCGTACCG CCCGACGCAG AGCGTCAATT TCATCACGTC GCACGATGGG
TTTTGCCTCT ACGACCTGGT TTCCTACAAT CGCAAGCACA ATCTGGCAAA TGGTCATGAG
AACACCGATG GCGCCGATCA GAACTTTAGC TGGAACTGCG GTTGGGAAGG GGACGAGCAT
GTGCCGCCGG AGGTGCTGGC GTTGCGGCGT CGGCAGGCGC GGAATCTCTT TACGTTGCTG
ATGCTGGCGA ATGGTACGCC GATGTTCGTT GCCGGTGATG AGTTTCTGAA TACGCAGCGC
GGCAATAATA ATCCGTACAA TCAGGATAAT GAGATTACCT GGCTCGACTG GGATTTGCTG
GAGCGCAATC GTGATATGTT TCGTTTTGTC AAAACGCTGA TTGCGTTCCG CAAAGCGCAT
CCCTCGATCC ACCGCAGCCG CTTCTGGCGC GATGATGTTC ACTGGTACGG CGTCAACGGT
CCGCCCGACA CATCGTACAA CTCGCACGCC GTCGCCTACT GTCTGCGCGG CGTTTCGGTC
GGTGACTGCG ATCTCTATGT GATGATCAAC GGTTACTGGA AGGACCTGGT CTTTGCCATT
CAGGAACAGT CGCCGGGAGG ATGGTGGCGC GTGATCGATA CGGCGCGCCC CTCTCCCGAC
GATATTCGCG AACCGGGGCG GGAAGTTCAG GTGTGTCAAC CGTACTACGT CGTCGGTGCG
CGATCAGTTG TCGTGTTGCG CTCGCGCACG ACGCAGGAAA TGTTGCTGTC CCTCAGCGAA
CCTCGAATGT GA
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| Protein sequence | MLTRESASWY QPSAWERSEG SPVSLGPTWV PAGEGYNFAL FSRHATSVTL LIYGADDFVT
PIYRHHLDPR RNKTHHVWHC WVPAAAIPGG RYYAYRVDGP RAPEEGHRFD STKIVLDPYA
PEVFFPPDYS REAAMRPGPN DGRAPLGVLP RREPRYDWEG DVRPHHTHDL IVYELHVRGF
TARANSGVAP EERGTFIGLI RKIPYLLELG VTAVELLPVH QFDPQEGNYW GYMTLNFFAP
HNGYAVHDPH REFRDMVKAM HAAGIEVWLD VVYNHTSEGD ERGPAYCYRL IDNRVYYLLT
PDRRQYINAS GCGNTLRCAD PAVRTLIVDS LTTWIQSMHV DGFRFDLASI LARNEDGTIN
HEDPALIHEI SMLAQRHGVR LIAEAWDISA YLLGRAFPGM TWRQWNGKFR DDVRAFVKGD
PGKIGDLMCR LYGSDDLFPD TLADAYRPTQ SVNFITSHDG FCLYDLVSYN RKHNLANGHE
NTDGADQNFS WNCGWEGDEH VPPEVLALRR RQARNLFTLL MLANGTPMFV AGDEFLNTQR
GNNNPYNQDN EITWLDWDLL ERNRDMFRFV KTLIAFRKAH PSIHRSRFWR DDVHWYGVNG
PPDTSYNSHA VAYCLRGVSV GDCDLYVMIN GYWKDLVFAI QEQSPGGWWR VIDTARPSPD
DIREPGREVQ VCQPYYVVGA RSVVVLRSRT TQEMLLSLSE PRM
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