Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1238 |
Symbol | |
ID | 5538707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1599050 |
End bp | 1600468 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640893373 |
Product | phytoene dehydrogenase and related protein-like protein |
Protein accession | YP_001431353 |
Protein GI | 156741224 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.690842 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCAT ATGATGCGGT GATCATCGGC GCCGGACCCA ACGGCCTGAC CGCAGCGTGT GTGCTGGCGC GCGCCGGAAA GCGGGTGGTG CTCATCGAAG CGCGCGAGAC AGTCGGCGGC GGTGTGTCGT CGGGTGAGAC GACCCTGCCG GGGTTCATCC ACGATCTCGG TTCGGCGGTG CATCCGTTCG GTATCGCCTC GCCTGTGTTC CGCATGTTGG AGCTAGAGCG CTTCGGTCTG CGCTGGATTC AGCCGCCGGC GCCGGTGGCG CATCCGCTCG ATGGCGGTCG CGCGGCGCTG CTGGAACGGT CGGTCCGCGC CACTGCCGCC TGGTTCGGGC AGGATAGGAT CGCGTATGGG CGATTGATGG CGCCAATGGC GCGTATGTGG GACCGCATCC AGCCGCTGGT GTTGAATCCG CTACGCTTTC CGGCGCACCC GTTCGCCGGA GCGTACTTTG GGGCGCTGGC GCTGCTGCCG GTCACACTGC TGGCGCGAGC GTTCTTCCGC GCAGACGCAG CGCCGGCGTT GCTCGCCGGG CTTGGCGCGC ACTCGCTGCT GCCACTGGAA GCGCCGTTGA CATCCGCGCC GGCGCTCGTC CTCGGCACGC TCGGTCATGC CGTCGGCTGG CCCATTCCTC GTGGCGGCGC GCAGGCAATC GCCAACGCAC TGGAATCCTG CCTGCGCGCC GACGGCGGCG AGATCCGCAC CGGATGGACG GTGCGGCATA CCGACGAATT GCCGAACGCC AGGGCATACC TGTTCGACAC GCCACCGCAG GGATTGATCC AGATTGCCGG CGACCGCCTG CCTGCCTGGT ACCGTCGGCG ACTGCAACGC TTCCGCCATG GACCGGGAGT GTTCAAACTC GATTATGCGC TCGATGGACT GATTCCCTGG ACGAATGCCG CATGTGCGCG CGCAGCGACC GTGCATCTTG GCGGCACGCT GGAAGAGATT GCCGAGTCGG AACGCGCGCC ACACTGCGGC ATGCATGCCA CGCACCCCTA TGTGCTTCTG GCGCAGCCAA CGCTGTTCGA CCCGACCCGC GCGCCGCCGG GGAAGCACAT TGCCTGGGCA TACTGCCATG TGCCAAACGG TTCAACTGTG GATATGACAT CTGCCATCGA AGCGCAGATC GAGCGATTCG CGCCGGGCTT CCGCAATCGC ATCCTGGCGC GGCGCGCTAT GAACTGCGCC GACATGGAAG CCTGGAACCC CAACCTGATC GGTGGAGACA TCAGCGGCGG ATTGCCCGAC TGGCGGCAAC TGATTACCAG ACCAACCCTT AGTTTCACAC CCTACCGCAC CCCGGCGCGC GGCATCTACC TCTGCTCCGC CTCGACGCCG CCGGGACCGG GGGTGCATGG CATGTGTGGC TATCACGCCG CCTGTGTCGC GCTCGCCGAC ATGGAATGA
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Protein sequence | MPAYDAVIIG AGPNGLTAAC VLARAGKRVV LIEARETVGG GVSSGETTLP GFIHDLGSAV HPFGIASPVF RMLELERFGL RWIQPPAPVA HPLDGGRAAL LERSVRATAA WFGQDRIAYG RLMAPMARMW DRIQPLVLNP LRFPAHPFAG AYFGALALLP VTLLARAFFR ADAAPALLAG LGAHSLLPLE APLTSAPALV LGTLGHAVGW PIPRGGAQAI ANALESCLRA DGGEIRTGWT VRHTDELPNA RAYLFDTPPQ GLIQIAGDRL PAWYRRRLQR FRHGPGVFKL DYALDGLIPW TNAACARAAT VHLGGTLEEI AESERAPHCG MHATHPYVLL AQPTLFDPTR APPGKHIAWA YCHVPNGSTV DMTSAIEAQI ERFAPGFRNR ILARRAMNCA DMEAWNPNLI GGDISGGLPD WRQLITRPTL SFTPYRTPAR GIYLCSASTP PGPGVHGMCG YHAACVALAD ME
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