Gene Rcas_1238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1238 
Symbol 
ID5538707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1599050 
End bp1600468 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content67% 
IMG OID640893373 
Productphytoene dehydrogenase and related protein-like protein 
Protein accessionYP_001431353 
Protein GI156741224 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.690842 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCAT ATGATGCGGT GATCATCGGC GCCGGACCCA ACGGCCTGAC CGCAGCGTGT 
GTGCTGGCGC GCGCCGGAAA GCGGGTGGTG CTCATCGAAG CGCGCGAGAC AGTCGGCGGC
GGTGTGTCGT CGGGTGAGAC GACCCTGCCG GGGTTCATCC ACGATCTCGG TTCGGCGGTG
CATCCGTTCG GTATCGCCTC GCCTGTGTTC CGCATGTTGG AGCTAGAGCG CTTCGGTCTG
CGCTGGATTC AGCCGCCGGC GCCGGTGGCG CATCCGCTCG ATGGCGGTCG CGCGGCGCTG
CTGGAACGGT CGGTCCGCGC CACTGCCGCC TGGTTCGGGC AGGATAGGAT CGCGTATGGG
CGATTGATGG CGCCAATGGC GCGTATGTGG GACCGCATCC AGCCGCTGGT GTTGAATCCG
CTACGCTTTC CGGCGCACCC GTTCGCCGGA GCGTACTTTG GGGCGCTGGC GCTGCTGCCG
GTCACACTGC TGGCGCGAGC GTTCTTCCGC GCAGACGCAG CGCCGGCGTT GCTCGCCGGG
CTTGGCGCGC ACTCGCTGCT GCCACTGGAA GCGCCGTTGA CATCCGCGCC GGCGCTCGTC
CTCGGCACGC TCGGTCATGC CGTCGGCTGG CCCATTCCTC GTGGCGGCGC GCAGGCAATC
GCCAACGCAC TGGAATCCTG CCTGCGCGCC GACGGCGGCG AGATCCGCAC CGGATGGACG
GTGCGGCATA CCGACGAATT GCCGAACGCC AGGGCATACC TGTTCGACAC GCCACCGCAG
GGATTGATCC AGATTGCCGG CGACCGCCTG CCTGCCTGGT ACCGTCGGCG ACTGCAACGC
TTCCGCCATG GACCGGGAGT GTTCAAACTC GATTATGCGC TCGATGGACT GATTCCCTGG
ACGAATGCCG CATGTGCGCG CGCAGCGACC GTGCATCTTG GCGGCACGCT GGAAGAGATT
GCCGAGTCGG AACGCGCGCC ACACTGCGGC ATGCATGCCA CGCACCCCTA TGTGCTTCTG
GCGCAGCCAA CGCTGTTCGA CCCGACCCGC GCGCCGCCGG GGAAGCACAT TGCCTGGGCA
TACTGCCATG TGCCAAACGG TTCAACTGTG GATATGACAT CTGCCATCGA AGCGCAGATC
GAGCGATTCG CGCCGGGCTT CCGCAATCGC ATCCTGGCGC GGCGCGCTAT GAACTGCGCC
GACATGGAAG CCTGGAACCC CAACCTGATC GGTGGAGACA TCAGCGGCGG ATTGCCCGAC
TGGCGGCAAC TGATTACCAG ACCAACCCTT AGTTTCACAC CCTACCGCAC CCCGGCGCGC
GGCATCTACC TCTGCTCCGC CTCGACGCCG CCGGGACCGG GGGTGCATGG CATGTGTGGC
TATCACGCCG CCTGTGTCGC GCTCGCCGAC ATGGAATGA
 
Protein sequence
MPAYDAVIIG AGPNGLTAAC VLARAGKRVV LIEARETVGG GVSSGETTLP GFIHDLGSAV 
HPFGIASPVF RMLELERFGL RWIQPPAPVA HPLDGGRAAL LERSVRATAA WFGQDRIAYG
RLMAPMARMW DRIQPLVLNP LRFPAHPFAG AYFGALALLP VTLLARAFFR ADAAPALLAG
LGAHSLLPLE APLTSAPALV LGTLGHAVGW PIPRGGAQAI ANALESCLRA DGGEIRTGWT
VRHTDELPNA RAYLFDTPPQ GLIQIAGDRL PAWYRRRLQR FRHGPGVFKL DYALDGLIPW
TNAACARAAT VHLGGTLEEI AESERAPHCG MHATHPYVLL AQPTLFDPTR APPGKHIAWA
YCHVPNGSTV DMTSAIEAQI ERFAPGFRNR ILARRAMNCA DMEAWNPNLI GGDISGGLPD
WRQLITRPTL SFTPYRTPAR GIYLCSASTP PGPGVHGMCG YHAACVALAD ME