Gene Rcas_1237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1237 
Symbol 
ID5538706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1597974 
End bp1599086 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content60% 
IMG OID640893372 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001431352 
Protein GI156741223 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTTC TCGAAATTGT CGGTGTGCGC AAGAGTTTTG GCGCTACGGT AGCGGTCGAG 
CACTTCGATC TGACCGTTGA ACGCGGCGAA TTCGTTTCGT TTCTGGGACC GTCGGGGTGT
GGGAAAACGA CGACGTTGCG CATGGTCGCC GGGTTCGAGA AACCCACCAC AGGGCGAATC
ATCATCGATG GCGTCGATGT CACCGATATG CCCCCCAATC GTCGCAATAT CGGCATGGTC
TTTCAGTCGT ATGCGCTCTT TCCAAACATG ACCGTCGCTG AGAATATCGG GTTTGGGCTG
AAAATTGCGC GCCGTCCGGC GGACGAGATT CGCGCGCGTG TCGAGGAACT TCTGCGGATC
ATGCACATGC CAGAGTTCGG GCGACGCTAC CCGTACCAGT TGTCTGGCGG GCAGCAACAG
CGCGTCGCGC TGGCGCGGGC GCTGGCGATT CACCCCAAGG TGCTGTTGCT CGATGAGCCG
CTCTCGGCGC TCGACGCCAA AATCCGCGCG TCGCTCCGCC AGGAGATCCG CGAGATCCAG
CGGCAACTCG GCATTACAAC TATTTACGTC ACCCACGACC AGGAAGAAGC CATGGCGCTC
TCCGACCGGA TTGTGGTGAT GAGCCGCGGA CGGGTGGAAC AGATCGGCAC GCCATTCGAG
GTCTACAATT TTCCGGCGAC GCGCTTTGTT GCATCGTTCG TCGGCACGCT CAACCTGATC
CAGGCGACGG TCGTCGATGC CGCTCTTGGA CTGCTGAGCA TCGAAGGGCG GCCAATCCGC
GTTGCGCGTC CGCTCGTGCA GCATCGTCCT GGCGACGCCA TCAGCCTTGC CATCCGCCCC
GAATTAATTG CGCTTGATGG GCAAATGAAC GGTGAGGTCA ACCGCCTGAG CGGTATCGTC
GAAGATGTGA CGTTTCTCGG TTCGATTGTG CGGGTTCAGG TCCATCTCTC GGCGAACAAA
CTGCACCTCG ATCTCTTCAA CAATCCACAG TTGCGCCCAC CACAACCAGG GTCGTCGATC
ACGGTACAAT TCGCTCCCGA AGCCTGCCTG GTTCTGGGTG AAGACGGATC ACCCCATCAT
TCCATGTCGG CGAGCGCGAC ACAGGCGGCG TGA
 
Protein sequence
MAFLEIVGVR KSFGATVAVE HFDLTVERGE FVSFLGPSGC GKTTTLRMVA GFEKPTTGRI 
IIDGVDVTDM PPNRRNIGMV FQSYALFPNM TVAENIGFGL KIARRPADEI RARVEELLRI
MHMPEFGRRY PYQLSGGQQQ RVALARALAI HPKVLLLDEP LSALDAKIRA SLRQEIREIQ
RQLGITTIYV THDQEEAMAL SDRIVVMSRG RVEQIGTPFE VYNFPATRFV ASFVGTLNLI
QATVVDAALG LLSIEGRPIR VARPLVQHRP GDAISLAIRP ELIALDGQMN GEVNRLSGIV
EDVTFLGSIV RVQVHLSANK LHLDLFNNPQ LRPPQPGSSI TVQFAPEACL VLGEDGSPHH
SMSASATQAA