Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1233 |
Symbol | |
ID | 5538702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1592815 |
End bp | 1594362 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640893368 |
Product | UDP-N-acetylmuramyl-tripeptide synthetase |
Protein accession | YP_001431348 |
Protein GI | 156741219 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGCAC ACCTTCACGA CCTTTTGCGA ACCCTCTGCG ATCCCGCGCA CCTGCCGCGC GCCAATCCGG CGATCACTGC CATCGTCTAC GACTCGCGCG CGGTGATGCC CGGCGCATTG TTCGTGGCAT ACCGCGGTTT TCACACCGAT GGGCATCTCT ACATCCCGCA AGCCATTGAA CGCGGCGCAG CCGCCGTCGT CTACGAAGAC CCGGCGTGGG ACGGACGCAT ACCGGTTCCG GCGTTGCGCA CACCCAATGC GCGTGCTGCG CTTGCGCCGC TCGCAGCGGC ATTCTATGGC TACCCTGGAC GACAGATGCG TGTCGTTGGC ATCACAGGCA CCGACGGAAA AACAACAACG ACCTTCCTGA CCAGCGTGGC GCTCGAAGCC GGTGGCGCTG TCACCGGGCT GATGGGCACA GTGGATTTCA AAATCGCCGG GCGCCTGTGG GCGAACGATT CGCGCCAGAG CACGCCGGAA GCGCCAGAAG TACAGGCGCT GCTGCGCGAT ATGGTGCATG CCGGTTGCGC GTATGCGGTT GTTGAGGCGA CATCGCATGC GCTCTCGGCG CGCTGGAACC GGCTTGCCGG TTGCGCCTTC GATATTGCAG TATTGACGAA TGTGACGCAG GAGCACCTGG ATTTTCACGG CACGGTCGAA CAGTATCGCC GCGATAAGGC GCGCCTGTTC GAGATGCTGG CAGAGTTTCA CGACGATGCT ACGCCGTTCA AACAACGCAA GATCGCCATT GTGAACGCCG ATGATCCGAA TCATCGCATG TTCCTCGACG CCGCCCCACC CTATGCCGAA CGATTGACCT ATGCCATCCA CGCCAATGCC GACGTGTGCG CCCGAAATGT CCGTTCAACC CGTGATGGTC TGATGTTCCG CGTGACAACG CCGTGGGGCG CTGCCGATGC GCATCTGCGA CTGACCGGCG ATTTCAACGT TTGGAATGCG CTGGCGGCGC TGACCGTCGC ATGCGCCGAA GGCGTACCGC TCAGTGTATG CCTTGCGGCG CTCGAACGTG TGCCCGGTGT GCGCGGGCGC ATGGAACGGA TCGAAATGGG GCAACCGTTC ACCGTGCTAG TCGATTACGC TCACACTCCC GGGGCGTTCG AGAAATTGAT GCGCATTGTG CGCCCGCTCA CCGATGGGCA ACTGATCGTC GTCTTCGGCA GCGCCGGAGA ACGCGACCGC GCCAAACGCC CGTTGCAGGG AGAGATTGCC GGGCGCTTCT GCGACCTCGT TGTGCTGACT GATGAAGACC CGCGGCTTGA AGATCGCGAG GCGATCATTG CCGAAATCGC GGTCGGTGTG GAAGCAGCCG GCAAACGGAT TGGCGAGACC TGCCTTTGCA TCCCGGATCG CGCCCACGCC ATTCGCACTG CCTTTGCGCG CGCCCGTCCC GGCGATATTG TCCTGCTCCT GGGCAAAGGT CACGAAGGGA GCATCATTTA CGGCACAACA CCAATGCCCT GGAACGAAGC GGCAGAAGCG CGGCGCGCCT TAGCAGAACT CGGTTTTGGT GCGTCGCCTC CATTTTGA
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Protein sequence | MMAHLHDLLR TLCDPAHLPR ANPAITAIVY DSRAVMPGAL FVAYRGFHTD GHLYIPQAIE RGAAAVVYED PAWDGRIPVP ALRTPNARAA LAPLAAAFYG YPGRQMRVVG ITGTDGKTTT TFLTSVALEA GGAVTGLMGT VDFKIAGRLW ANDSRQSTPE APEVQALLRD MVHAGCAYAV VEATSHALSA RWNRLAGCAF DIAVLTNVTQ EHLDFHGTVE QYRRDKARLF EMLAEFHDDA TPFKQRKIAI VNADDPNHRM FLDAAPPYAE RLTYAIHANA DVCARNVRST RDGLMFRVTT PWGAADAHLR LTGDFNVWNA LAALTVACAE GVPLSVCLAA LERVPGVRGR MERIEMGQPF TVLVDYAHTP GAFEKLMRIV RPLTDGQLIV VFGSAGERDR AKRPLQGEIA GRFCDLVVLT DEDPRLEDRE AIIAEIAVGV EAAGKRIGET CLCIPDRAHA IRTAFARARP GDIVLLLGKG HEGSIIYGTT PMPWNEAAEA RRALAELGFG ASPPF
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