| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1231 |
|---|
| Symbol | |
|---|
| ID | 5538700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1589940 |
|---|
| End bp | 1590914 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640893366 |
|---|
| Product | Acetyl xylan esterase |
|---|
| Protein accession | YP_001431346 |
|---|
| Protein GI | 156741217 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3458] Acetyl esterase (deacetylase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.302621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTCT TCGATCTCTC GTTCGATGAG TTACAGCAGT ATCGCCCGCC GCGTGAGGAA
CCGCCCGATT TCGACGCATT CTGGCGAATG ACGCTCGATG AGGCGCGCGC ATATCCGCTC
GATGCGCGCT TTGAACCATG CGACGCCGGG CTGGCAACCG TCGAAACCTT TGATGTCACC
TTTCGCGGCT ATGGCGGTCA ACCGATCAAA GGATGGCTGC TGCTGCCGCG CCACCGCTCC
GGTCCGTTGC CATGCGTGGT GGAGTACATC GGGTATGGCG GCGGGCGCGG CTTTCCAACA
GACTGGTTGC TCTGGAGTGC AGCCGGGTAT GCGCACCTGG TCATGGACAC ACGTGGGCAG
GGGAGCGCCT GGCTCAAGGG CGACACGCCC GATCCCGAGC CGGAAGGCTC GAATCCGCAC
CATCCCGGCT TCATGACTCG CGGGATCGCC AGTCCTTTCA CCTATTACTA TCGCCGGGTC
TTTACCGACG CCGTGCGCGC GGTCGAGGCG GCGCGCGCGC ATCCGGCAGT CGATGCCCGG
CGCGTTGCGG TGACCGGCGG CAGTCAGGGA GGCGGGATCG CAATTGCTGT TGCCGGCCTG
ATGCACGACA TCCGGGCGAC TATGCCGGAT GTGCCATTTC TCTGCCACTA CCGCCGCGCC
ACTGAGATCA GCGACTCGAA CCCATACTTC GAGATTGCGC GTTATTGCAA AGTACACCGT
GATCGGGTCG AGGCGGTATT TCAGACATTG AGTTACTTTG ACGGGATCAA TTTCGCCGCG
CGAGCGCAGG CGCCAGCCCT CTTCTCGGTC GGTTTGATGG ACGATGTGTG CCCGCCATCG
ACTGTCTACG CCGCCTACAA CTATTACGCC GGTCGGAAAG AGATCCGTGT CTACCGGTAC
AACCAGCACG AAGGCGGCGG CACGTTCCAG AATCAGGAGA AGATCCGGTT CCTAAGAGAG
GCGGTTGAAG TTTGA
|
|---|
| Protein sequence | MAFFDLSFDE LQQYRPPREE PPDFDAFWRM TLDEARAYPL DARFEPCDAG LATVETFDVT
FRGYGGQPIK GWLLLPRHRS GPLPCVVEYI GYGGGRGFPT DWLLWSAAGY AHLVMDTRGQ
GSAWLKGDTP DPEPEGSNPH HPGFMTRGIA SPFTYYYRRV FTDAVRAVEA ARAHPAVDAR
RVAVTGGSQG GGIAIAVAGL MHDIRATMPD VPFLCHYRRA TEISDSNPYF EIARYCKVHR
DRVEAVFQTL SYFDGINFAA RAQAPALFSV GLMDDVCPPS TVYAAYNYYA GRKEIRVYRY
NQHEGGGTFQ NQEKIRFLRE AVEV
|
|---|
| |