| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1219 |
|---|
| Symbol | |
|---|
| ID | 5538686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1575211 |
|---|
| End bp | 1577526 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640893352 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001431334 |
|---|
| Protein GI | 156741205 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCAC CAGCAACACT CGCGGTGAGC AGTGGCAATG TCGCCACCGA CTCCTCTGTT
CGTTCAACGC GCCGTACCAG TGCCGCGCCG CAATCTGCGC TGCGTCCCAA TCCTGAGTTT
GCGCATAGCC CGGTTGCCGA TGAACTCGTC GCGCGGCTCA CGATCTATCA GCGCCAGGCG
AAGAGCAGCG CGGAACAGAT AGCGCGCAGC GAGGAATTGG TGCGCAATGC GTATGCCATT
GCCTGTGAAG CGCACAGTAA ACAACAACGC GACTCAGGTG AGCCGTACAT TGATCATCCG
GTTGCTGTCG CCCACATCCT GATCGACTTG CAACTCGACG CCGCTTCGGT CGCCGCTGCG
TTGCTCCACG ATGTCCTCGA AGATACGCTG GTCACAAAAG AACAACTGAT AGCGCTGTTC
GGCGCGGAGA TTGCGAACCT CGTCGATGGC GTGACGAAAC TTTCGGCGCT CGAGGCGCGC
ACGCGTGAGG AGGCGCAGGT CGGCACCTAT CGCAAGATGT TCATCGCCAT GGCGGACGAC
CCGCGCGTGG TGCTGGTCAA ACTGGCGGAC CGCCTCCACA ACATGCGCAC CATCAGTTCG
CTCTCCGAAG AGCGGCAGAA GCGCATGGCG CGCGAAACCC TCGAAATCTA TGCGCCTTTA
GCGCATCGCC TCGGCATCTG GCAGATCAAG TGGGAACTCG AAGACCGCGC GTTCGCCGTG
CTCAATCCCG CAAAGTATCA GGAGATCAGT CGGCAACTGG CGCTGCGCCG CGATGCGCGC
GAACGCCTCA TTCATCGCGT GATCCAACGC CTGCGCCAGG TCCTCGAAAA AGAGGGGATT
AAGGCGGATA TTACCGGTCG TCCCAAACAT ATCTACTCCA TCTATCGCAA GATGGAGCGC
AAAGGCGTCA GCCTCGACCA GATCTACGAC CAGCTCGCCG TGCGCGTGAT TGTCGATACA
GTTGCCGACT GTTATCGCGT GCTCGGTCTG GTGCATGCGA CATGGCCTCC CGTTCCCGGC
GAGTTCGACG ATTACATCGC CATGCCAAAA GAAAGCATGT ATCAGTCGCT TCACACCACT
GTGCTGATAC CGGGAGGGCA GCCGTGTGAG ATTCAGATTC GCACGCACGA GATGCACGAA
ATCGCTGAAC GTGGTATTGC AGCACACTGG CGCTACAAAG AAGGATTTGG GCGCATCGAT
GCGTCGTTCG AGAGCAAACT GGCATGGTTG CGCGGCTTGA TTGAGTGGCG ACGCGATCTG
ACCGATGCGC ACGAGTTCGT CGATTCGTTC AAAACCGATG TGCTCGAAGA ACAGGTGTAT
GTGTTCACGC CCAAGGGGAA GATTATCGAT CTTCCGGTGG GGGCGACGCC GGTCGATTTC
GCATACCGCA TCCACTCCGA CGTCGGGCAT AGTTGTGTCG GCGCAAAAGT GAACAATCGG
ATCGTCCCGC TCGATTATCA ATTGCGGAAT GGCGAAATCG TCCATATCAT GACCTCAAAG
ACGCCGCGCG GTCCGAGTCG CGACTGGCTC AACTTCGTCA AGACCAGCGG CGCGCGCAAT
CACATCCGCC GTTACTTCAA GCGCCTCGAC CGGACGGAAA ATATCGCTGC CGGACGTGAA
CTGCTCGAAA AAGAACTGAA ACGCCTTGGT CTGTCGGTGC CGTTTGAGGA AATCGTTGCG
ATCACCGGTC TCAAATCGAT TGATGATGTG TTTGCTCAGA TCGGCAGCGG CGACATTACG
GCGCGCCAGG TGGCGCAGAA AATCCTCAGC CATCGGACGC CGGTCGGCGC CGATGACCTG
GCCGACATTC CACAGGTGGC GCCGCCGGCT GAACGCGCCG CCGAAACCAG CATCATTCGC
GTGCGCGGCA TTGAAAATAC GCAGGTGCCG ACACGCCTGG CGCGTTGCTG CAACCCAGTG
GTTGGCGAGC CAATCGTTGG CTTCGTCACG CGCGGGAAGG GGGTGACGGT GCATCGTGCT
GATTGCCGAA CCATTCTGAA TGAACGTGAC CGGGCGCGGC TTGTGGAAGT GACCTGGGGC
GCGGGCGCGC CGAAACAGTG GTACCCCGTG CCGGTGCGGA TTGAAGCCTG GGATCGCGTT
GGGCTATGGC GCGATGTGTC TGGCGCCATA GCCGATGCTG GCATTAATAT TGATGCAGTC
GAACAGGTGC CAACCCGTCG GCCCGGTCGC GCGGTGCTGG CTGTCACCCT CCGCATTCAA
AGCATCGCGC AACTGACTTC TATCCTCGAT AAACTCAACC GCCTTCCCGA TGTCATCGAA
GCGCGGCGTG AACAGAACAC CATCCTGTCG TCCTGA
|
|---|
| Protein sequence | MDSPATLAVS SGNVATDSSV RSTRRTSAAP QSALRPNPEF AHSPVADELV ARLTIYQRQA
KSSAEQIARS EELVRNAYAI ACEAHSKQQR DSGEPYIDHP VAVAHILIDL QLDAASVAAA
LLHDVLEDTL VTKEQLIALF GAEIANLVDG VTKLSALEAR TREEAQVGTY RKMFIAMADD
PRVVLVKLAD RLHNMRTISS LSEERQKRMA RETLEIYAPL AHRLGIWQIK WELEDRAFAV
LNPAKYQEIS RQLALRRDAR ERLIHRVIQR LRQVLEKEGI KADITGRPKH IYSIYRKMER
KGVSLDQIYD QLAVRVIVDT VADCYRVLGL VHATWPPVPG EFDDYIAMPK ESMYQSLHTT
VLIPGGQPCE IQIRTHEMHE IAERGIAAHW RYKEGFGRID ASFESKLAWL RGLIEWRRDL
TDAHEFVDSF KTDVLEEQVY VFTPKGKIID LPVGATPVDF AYRIHSDVGH SCVGAKVNNR
IVPLDYQLRN GEIVHIMTSK TPRGPSRDWL NFVKTSGARN HIRRYFKRLD RTENIAAGRE
LLEKELKRLG LSVPFEEIVA ITGLKSIDDV FAQIGSGDIT ARQVAQKILS HRTPVGADDL
ADIPQVAPPA ERAAETSIIR VRGIENTQVP TRLARCCNPV VGEPIVGFVT RGKGVTVHRA
DCRTILNERD RARLVEVTWG AGAPKQWYPV PVRIEAWDRV GLWRDVSGAI ADAGINIDAV
EQVPTRRPGR AVLAVTLRIQ SIAQLTSILD KLNRLPDVIE ARREQNTILS S
|
|---|
| |