Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1215 |
Symbol | |
ID | 5538681 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1569455 |
End bp | 1571053 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640893347 |
Product | NLP/P60 protein |
Protein accession | YP_001431330 |
Protein GI | 156741201 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.35545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATTGAGC AAAGTCATCG AGGTATGGCA TCGGACCCGT ACAGCCTCGA GTCGCTTCAG CGCCGCGCGC TCGCTCGGAG GAGACAACAA ACATCACTCA CCCGTGCACT CGCAACTCAA TGGCAAACGG TTCGGTCCGC CCGGTTCAGT TCCCCCTCTG CTCTTCTCGC CCGTCTTCCG GCTCGCGTTG TTCTCCATGC GCTGGTTGCG CTGCTTCTCC CCGTCGCAAT GCTGCTGTCG CAGTTGCGTC CGGGGGTGTT GACGCCAGTC GCTCCGGCCC CGGCTGCTCC GGCGGAGGGG AGCGAGTTCA CCGTGCCGCT GACGCCGATC GACCTCGATG CCACGGTGGG CGATGCGCCG CTGGAAGAAA CCGCCGACCT GCCGGTGCCG CTTTCGCTTA TTTCACGAAG CGAAGCGCTG GCGCCGATCG TCGTCCCGGC GACGGTCGCG GTCGAGCGCG CCTTTCTGCG GAACGGTCCC GGCACGGAGT ATGATGCGGT CGGGCGCATT TCCGGCGAGA CGCCGGTGCA GGTCATCGGT CGCTATGGCG ACTGGTTTCA GGTCCGTGAA CGGGTTGATG GCCCGATCTA CTGGATTTCC GGTGAGGTGC TTGCTATCTC AGAGGCAGCG TCCTACACAC TGTTTGAAGT GCAGGAGAGC GCCATCCCGC CGCCGCCGCC GCCCAAGATC GCAACCGTGC GCGAAAGCGG TCTTCAGTTG CGCGATGGTC CCGGAACGAA TTATGTGTCG ATGACGACCC TGCAACAGCA TACGCAGGTC GAATTGTACG AAATCTATCA GGACTGGTTC CACATCGGCG CTCCTGGCGG ACTCGATGGG TGGGTGAAGG CGGAGTTCCT GAATGTTGAT CCCTCGGTCG TCAAGCGATT GCTGGTCGCC GAAACCATTC CCGATCCGAA CCCGGCGCTG GTGGGTGTTA TTGCAGAAAA TAGCGTCAAC CTGCGCAAGG GTCCCGACTC GCGCTACGAC CGGATCGGTC GGATCGATGC GGGGGTGCAG GTCGATCTGA TCGGCAAGCA TAAGGATTGG CTGCGGGTGC GGCTGCCCGA CGGCACAAAG GCCTGGGTGT TTCGCGATCT GATCAGCACC ACAGCGCACG TGTTGCGGCG GGTGCCGGTC AGCCGCGACT TCCCGGCGCT GCCGGTGAGC GGCGGTCGCC CCGGCGCGAG CGCCGGTTTG GCGAATATTC CGGCCAGCGG TGATATCGCC AGTTTTGCCG TACAGTTCGT CGGGGCGCGC TATCGCTGGG GCGGCTCAAG CCCGGCGACC GGCTTTGACT GTAGCGGGTT CACCAGTTAT GTCTATCGAC AGTTTGGCGT CAATCTGCCG CGCAGCGCCG CTTCGCAGTT CAATACTGCG TATGGAGCGT CGGTCGGTCC GATGGAAAAT CTGGCGCCCG GCGATCTGGT CTTCTTCCGC AATACCGGCG GGCGGCGCGG CATCAGTCAT GTGGCTCTCT ACATCGGCGG CGGGCGCATG GTGCATGCCA TGACGCCACG CTACGGTGTG CAGGTGTCGA GCATCTGGGG GTCGTACTGG ACATCGCGCT ACTACGGGGC TATCCGGGTG CGCCGGTAG
|
Protein sequence | MIEQSHRGMA SDPYSLESLQ RRALARRRQQ TSLTRALATQ WQTVRSARFS SPSALLARLP ARVVLHALVA LLLPVAMLLS QLRPGVLTPV APAPAAPAEG SEFTVPLTPI DLDATVGDAP LEETADLPVP LSLISRSEAL APIVVPATVA VERAFLRNGP GTEYDAVGRI SGETPVQVIG RYGDWFQVRE RVDGPIYWIS GEVLAISEAA SYTLFEVQES AIPPPPPPKI ATVRESGLQL RDGPGTNYVS MTTLQQHTQV ELYEIYQDWF HIGAPGGLDG WVKAEFLNVD PSVVKRLLVA ETIPDPNPAL VGVIAENSVN LRKGPDSRYD RIGRIDAGVQ VDLIGKHKDW LRVRLPDGTK AWVFRDLIST TAHVLRRVPV SRDFPALPVS GGRPGASAGL ANIPASGDIA SFAVQFVGAR YRWGGSSPAT GFDCSGFTSY VYRQFGVNLP RSAASQFNTA YGASVGPMEN LAPGDLVFFR NTGGRRGISH VALYIGGGRM VHAMTPRYGV QVSSIWGSYW TSRYYGAIRV RR
|
| |