Gene Rcas_1175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1175 
Symbol 
ID5538641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1520706 
End bp1521785 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content62% 
IMG OID640893307 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001431290 
Protein GI156741161 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.169908 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCTGT GGCGGCAACT TCGCTGGCGT ATCATCGCTG CACAGATGCT CGTTGTGCTG 
GTTGGCGTTG TGACGCTGAT TGTAACGGCC GACATCGTGG CGGCGCGCAC GGTTGATCCC
GCACTGTTGC CCGTTTTTGA AGAAGCGGTG CTCCAGGCGC TGATCGTGGC CGCCCTGGCA
TCGGCACTGG TCGGTCTTGG CGCAAGCCTG CTGTTGGTGC GCGAGATTCT GCGTCCGTTG
CGCCAGCTGG CGGTCAGCAG TCGCCGGATT GCCAGCGGTC ATTACGATGA ACGGGTAACT
GTGCCGTTGA GCGATGAACT GCGCGATGTG GCGCAGAGTT TCAATCAGAT GGCGGAAGCG
TTGGCGCAGG TCGAACAGCA ACGCGTGACC CTGATCGGCA ATGTGGCGCA TGAGTTGCGC
ACACCGCTTG CCGGTCTCGA AGGGTACCTT GAAGGATTGC TCGATGGCGT GTTGCCGGGC
GATCCCGAAA CAATCAGTGC TATGCAGCAC GAAGTGCGGC GTCTACGGCG ACTGGTCGAT
GACTTGCAGC ACCTCTCACG GGTCGAGGCG GGTCAGATGC CGCTTCAATC GCAGGTCTTC
GATCTCGTGG CGCTGGTGCA GCGTATTGTT GCTCAACTGC GACCACAACT CATCGAGCAG
TGCCTGGAGA TAGCCGTCGA AGCGCCCGAC AGAGCAGTGC TGGCATATGC CGATCCGGAT
CGAACGGCGC AGGTGCTGGT CAATCTGGTG GGCAACGCCA TTCGCTACAC ACCGGAGGAC
GGATGCATCA CGCTCCGGGT GCGCAGCGAG GTGGAACACG TTCAGGTTGC CGTAGAAGAT
ACTGGCATCG GCATTCCGGC GGAAGCGCTG CCCTACCTGT TCGAGCGTTT CTACCGCGTC
GATCCATCGC GCAGCCGGGC GAGCGGCGGC AGCGGGATCG GGCTGACGAT TGCGCGTCAC
CTGGCGCGGG CGATGGGGGG CGAGATCACG GCTACCAGCC CTGGCATTGG TCAGGGAAGC
GTCTTTACCC TGACCCTGCC GCGCGGCGAT AATGAAAGGG GCAAGCGCCA TAGTTCGTGA
 
Protein sequence
MGLWRQLRWR IIAAQMLVVL VGVVTLIVTA DIVAARTVDP ALLPVFEEAV LQALIVAALA 
SALVGLGASL LLVREILRPL RQLAVSSRRI ASGHYDERVT VPLSDELRDV AQSFNQMAEA
LAQVEQQRVT LIGNVAHELR TPLAGLEGYL EGLLDGVLPG DPETISAMQH EVRRLRRLVD
DLQHLSRVEA GQMPLQSQVF DLVALVQRIV AQLRPQLIEQ CLEIAVEAPD RAVLAYADPD
RTAQVLVNLV GNAIRYTPED GCITLRVRSE VEHVQVAVED TGIGIPAEAL PYLFERFYRV
DPSRSRASGG SGIGLTIARH LARAMGGEIT ATSPGIGQGS VFTLTLPRGD NERGKRHSS