| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1172 |
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| Symbol | |
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| ID | 5538638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1516937 |
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| End bp | 1517809 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893304 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001431287 |
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| Protein GI | 156741158 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0395] ABC-type sugar transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.780322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.346873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCA TTGCCACGCC TGCATTCGGG CGACGACGCC TCCGCTGGTC ACGCCTGGTC
ATTTACGGCG TCATGACCAC GTTTCTGCTC TTCTTTCTGC TCCCGGTCTA TCTGCTGCTG
ATCACCAGTT TCAAAAGTTT CGATCAGGTG AGCCTCAGCC GGATGTGGGA CCTGCCGACG
AGTTTTTCGC TCGAAAGTTT CAACCGCGCC TGGAACGGCG GCGAAGGGGT CATTGGGATG
CGCGGCAGTT TCTGGAACAG CGTGCAACTG GTGGTTCCGG CGACGGTCAT CTCGTGCATT
CTGGGGTCGC TCAACGGCTA TGTGCTATCG AAATGGCGCT TCCCCGGCTC AGAAACGCTC
TTTACTCTGA TTCTCTTCGG TATGTTCATT CCCTACCAGA GCGTCCTGGT GCCGCTGGTC
GAAATACTGC GCGAGATGCG CCTGTACGCG ACGATTCCCG GCCTGATCCT GGTGCATGTG
GTCTACGGCA TTCCGATCAC AACCCTGATT TTCCGCAACT ACTACGCGAC CGTGCCGAAC
GAACTCGTAG AAGCCGGGAA GATCGATGGC GCCGATTTCT TCGGTATCTA CCGCCATGTG
ATGCTGCCGC TCTCCGCACC TGGTTTTGTG GTCGTGGCGA TCTGGCAATT CACCTCGATC
TGGAACGAGT TCCTGTTCGG GCTGATCATT ACCAATGACC CGCAGTTGCG CCCGGTGACC
GTGGCATTGC AGAACCTGTC GGGGAGCCAG TTCACGCAGT GGAATGTGCA GATGGCCGGG
GCGCTGCTGG TGGCGCTGCC GCCGCTGCTG GTCTACATTT TCCTGGGGAA ATACTTCCTG
CGCGGGCTGC TGGCCGGGTC GCTGAAGGGG TAG
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| Protein sequence | MSSIATPAFG RRRLRWSRLV IYGVMTTFLL FFLLPVYLLL ITSFKSFDQV SLSRMWDLPT
SFSLESFNRA WNGGEGVIGM RGSFWNSVQL VVPATVISCI LGSLNGYVLS KWRFPGSETL
FTLILFGMFI PYQSVLVPLV EILREMRLYA TIPGLILVHV VYGIPITTLI FRNYYATVPN
ELVEAGKIDG ADFFGIYRHV MLPLSAPGFV VVAIWQFTSI WNEFLFGLII TNDPQLRPVT
VALQNLSGSQ FTQWNVQMAG ALLVALPPLL VYIFLGKYFL RGLLAGSLKG
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