| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1163 |
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| Symbol | |
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| ID | 5538629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1510131 |
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| End bp | 1511108 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893295 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001431278 |
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| Protein GI | 156741149 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.925084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.538197 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGACG CCTTTTACAA ACAACTGCTC GATGAGATGC ACGACGGGGT GTATTTTGTT
GATCGCCATC GTCGGATTCT GTACTGGAAC CGGGGCGCCG AACGCCTCTC CGGGTACAGT
GCCGATGAGG TGATCGGACG CTTCTGTGGC GACAATCTGC TCCGCCATGT CGATGAATGT
GGACGGCGGT TATGCACCGG CATGTGTCCG CTTGCCGCAA CCATCCGCGA CGGTCAGCCG
CGTCAGGCGG AGGTGATCAT GCATCACAAA CAGGGGCACC GTGTGCCGGT GCTGGTGCGT
GTGGCGCCGA TTCGGGATAA GAGCGATGCC ATTGTCGGCG CTGTCGAAGT CTTCAGCGAC
AACACTTATC AGAAAGCAGC GCTCGAAGAA ATTGAACGCC TGCGCGAACT GGCGTTGCTC
GATCCACTGA CCGGTATCGG CAATCGGCGC TTCATCGAAA GCAACACCCA TAGTCGGCTC
GAAGAGTTGC GGCGCTATGG CTGGCCCTTT GGGGTCATTC TGGCTGATAT TGACCATTTC
AAAGCGATCA ACGACACCTT CGGGCATCTG GTTGGCGACG ATGTGTTGAA AATGGTCGCG
CACACCCTGG CGCACAATGT GCGCGCCTTC GACGCAGTAG GGCGATGGGG CGGTGAGGAA
TTTGCCATCG TCGCCCAGAA TGTCAGCGCC GGTATGCTGC TCGTCCTCGC CGAACGCCTG
CGCGCGCTGG TCGAACAATC CACCCTATTC ATCGGCGCCA GGAATGTCCA CGTGACTATT
TCGCTCGGTG CGGCGATCGC GCATCCGGAT GACACGCCGC TCGGTCTTCT TGATCGCGCG
GATCATCTTC TGTACCAGAG CAAACAGAAC GGACGCAACT GCGTTTCGTC GGAGGCGGCG
CCGTCGTCCG TCGTTGGGGC GCAAAAAGAT GTGGCGCGCA TGGCGCCGAC GGCGCACAAA
GAGGTGTGTT CACGCTGA
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| Protein sequence | MDDAFYKQLL DEMHDGVYFV DRHRRILYWN RGAERLSGYS ADEVIGRFCG DNLLRHVDEC
GRRLCTGMCP LAATIRDGQP RQAEVIMHHK QGHRVPVLVR VAPIRDKSDA IVGAVEVFSD
NTYQKAALEE IERLRELALL DPLTGIGNRR FIESNTHSRL EELRRYGWPF GVILADIDHF
KAINDTFGHL VGDDVLKMVA HTLAHNVRAF DAVGRWGGEE FAIVAQNVSA GMLLVLAERL
RALVEQSTLF IGARNVHVTI SLGAAIAHPD DTPLGLLDRA DHLLYQSKQN GRNCVSSEAA
PSSVVGAQKD VARMAPTAHK EVCSR
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