| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1145 |
|---|
| Symbol | |
|---|
| ID | 5538611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1481812 |
|---|
| End bp | 1482495 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640893277 |
|---|
| Product | LmbE family protein |
|---|
| Protein accession | YP_001431260 |
|---|
| Protein GI | 156741131 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2120] Uncharacterized proteins, LmbE homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.95917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AACCCAAACG CGCGCTTGTG ATTGGCGCCC ATCCCGACGA CAATGAGTTC
GGCGCCGGTG GAACCATCGC CAAACTTGCC GATCAGGGAT GGGACATCAC GTTCATCATC
GCCACGAATG GCAACAAAGG CAGCCACGAT CCGGCGATGT CATCGTTTCG CCTGTCGGAA
ATTCGCGAGC AGGAGCAGCG CGCCGCCGCC GAAGTGCTCG GAGTGCGCCG CGTGATCTTC
CTGCGTAACA ACGATGGTGA ACTTGAACCG TCTCCGGCAT TGCGCGCCGA ATTCGCTCTC
TACATTCGCC ATTTCAAACC GCATGCGATC TACACTCACG ATCCCTGGAA ACATTATATG
TTGCACCCTG ACCATCGCGC CGTCGGCTTC GCCGTGATCG AGGCAGTCGT TAGCGCGCGC
GACCACCTGT TCATGCCGGG GTTGGGACAG ATCGGCATTG GCGTCTGGCG GCCCGAGGCG
CTCTACCTGT GGGGCGCCGA GCAGCCGGAC TACGCCGAAG ATGTCTCGGA CTACGTGGAC
CGGAAGATTG CCGCGTTGCG CGAGCATCAC ACGCAACTGG ACGAGGTTCA GGGTTGGGAA
GAGCGGGTGC GTCAGCGCAT GGCAGAAGCG GGCAAAGAAC ACGGTTTTGC CGCAGCCGAG
ATGTTCAAGA AACTTCCGGT GTAA
|
|---|
| Protein sequence | MTDEPKRALV IGAHPDDNEF GAGGTIAKLA DQGWDITFII ATNGNKGSHD PAMSSFRLSE
IREQEQRAAA EVLGVRRVIF LRNNDGELEP SPALRAEFAL YIRHFKPHAI YTHDPWKHYM
LHPDHRAVGF AVIEAVVSAR DHLFMPGLGQ IGIGVWRPEA LYLWGAEQPD YAEDVSDYVD
RKIAALREHH TQLDEVQGWE ERVRQRMAEA GKEHGFAAAE MFKKLPV
|
|---|
| |