Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1128 |
Symbol | |
ID | 5538594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1462594 |
End bp | 1463487 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640893262 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_001431245 |
Protein GI | 156741116 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.925084 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATGGTT TTCTCAACAT CGACAAGCCA TCCGGCATGA CCTCGCATGA TGTCGTGGTG CGTATCCGGC GGTTGAGCGG GCAGCGGCGC GTCGGGCACG CCGGAACGCT CGATCCGGCG GCGACCGGGG TGCTGGTCGT GGCGCTTGGC GGGGCAACGC GGCTGATTGA GTATGTTCAG CATCAGACGC TCAAACGCTA TCTGGCGGCG GTGTGTTTGG GTGCGACAAC GACAACTGAT GATGCAAACG GTGAAGTGGT CGTGCAGCAA GCGCTGCCTC CGCTCGACCG AGCCATGATC GAGGAGGCGC TCGCGCCGTT GCGTGGGACG ATCTGGCAGA CTCCGCCGAT GTATGCGGCG CTGCACCATC AGGGTCGCCG TCTGTATGCG CTGGCGCGCG CGGGTGTGAC GGTTGAACCG CCGCCACGCC AGGTGTATAT CGAGCGGCTC GAACTGGTTG AGTACCAACC TCCGCTGTTG ACGCTCGATG TGGTGTGCGG CAGCGGTACG TACATTCGCG CACTGGCGCG TGATCTGGGG GTGGCGCTGG GATGCGGTGC GCATCTCGCA GCGCTCCGGC GCACGGCGGT GGGCGCCTTT CGTGTCGAAG ACGCAATATC GCTCCATGTG CTGGAAGAGG AGGTGCATGC CGACGCGCAC GAGGCGCTGC GTCGGCGGCT CTTGCCGCCA GAGATTGCGG TTGCAGACTG GCATGCCCTG CGCCTCGATG AAGAGCAGGC CCGCCGGATC CGGCACGGTC TCGCGATTCC TGCTCCGGCT GATGCGCCAT CACAGACGCG CGCGCATGCT CCCGATGGCA CATTGCTGGC GCTGCTGCGG TATGATGGCA GTCACTGGCG CCCGATAAAA GTATTCGATT GGACTGATGC ATGA
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Protein sequence | MHGFLNIDKP SGMTSHDVVV RIRRLSGQRR VGHAGTLDPA ATGVLVVALG GATRLIEYVQ HQTLKRYLAA VCLGATTTTD DANGEVVVQQ ALPPLDRAMI EEALAPLRGT IWQTPPMYAA LHHQGRRLYA LARAGVTVEP PPRQVYIERL ELVEYQPPLL TLDVVCGSGT YIRALARDLG VALGCGAHLA ALRRTAVGAF RVEDAISLHV LEEEVHADAH EALRRRLLPP EIAVADWHAL RLDEEQARRI RHGLAIPAPA DAPSQTRAHA PDGTLLALLR YDGSHWRPIK VFDWTDA
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