Gene Rcas_1128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1128 
Symbol 
ID5538594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1462594 
End bp1463487 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content64% 
IMG OID640893262 
ProducttRNA pseudouridine synthase B 
Protein accessionYP_001431245 
Protein GI156741116 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.925084 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGGTT TTCTCAACAT CGACAAGCCA TCCGGCATGA CCTCGCATGA TGTCGTGGTG 
CGTATCCGGC GGTTGAGCGG GCAGCGGCGC GTCGGGCACG CCGGAACGCT CGATCCGGCG
GCGACCGGGG TGCTGGTCGT GGCGCTTGGC GGGGCAACGC GGCTGATTGA GTATGTTCAG
CATCAGACGC TCAAACGCTA TCTGGCGGCG GTGTGTTTGG GTGCGACAAC GACAACTGAT
GATGCAAACG GTGAAGTGGT CGTGCAGCAA GCGCTGCCTC CGCTCGACCG AGCCATGATC
GAGGAGGCGC TCGCGCCGTT GCGTGGGACG ATCTGGCAGA CTCCGCCGAT GTATGCGGCG
CTGCACCATC AGGGTCGCCG TCTGTATGCG CTGGCGCGCG CGGGTGTGAC GGTTGAACCG
CCGCCACGCC AGGTGTATAT CGAGCGGCTC GAACTGGTTG AGTACCAACC TCCGCTGTTG
ACGCTCGATG TGGTGTGCGG CAGCGGTACG TACATTCGCG CACTGGCGCG TGATCTGGGG
GTGGCGCTGG GATGCGGTGC GCATCTCGCA GCGCTCCGGC GCACGGCGGT GGGCGCCTTT
CGTGTCGAAG ACGCAATATC GCTCCATGTG CTGGAAGAGG AGGTGCATGC CGACGCGCAC
GAGGCGCTGC GTCGGCGGCT CTTGCCGCCA GAGATTGCGG TTGCAGACTG GCATGCCCTG
CGCCTCGATG AAGAGCAGGC CCGCCGGATC CGGCACGGTC TCGCGATTCC TGCTCCGGCT
GATGCGCCAT CACAGACGCG CGCGCATGCT CCCGATGGCA CATTGCTGGC GCTGCTGCGG
TATGATGGCA GTCACTGGCG CCCGATAAAA GTATTCGATT GGACTGATGC ATGA
 
Protein sequence
MHGFLNIDKP SGMTSHDVVV RIRRLSGQRR VGHAGTLDPA ATGVLVVALG GATRLIEYVQ 
HQTLKRYLAA VCLGATTTTD DANGEVVVQQ ALPPLDRAMI EEALAPLRGT IWQTPPMYAA
LHHQGRRLYA LARAGVTVEP PPRQVYIERL ELVEYQPPLL TLDVVCGSGT YIRALARDLG
VALGCGAHLA ALRRTAVGAF RVEDAISLHV LEEEVHADAH EALRRRLLPP EIAVADWHAL
RLDEEQARRI RHGLAIPAPA DAPSQTRAHA PDGTLLALLR YDGSHWRPIK VFDWTDA