Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1107 |
Symbol | |
ID | 5538573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1433177 |
End bp | 1434892 |
Gene Length | 1716 bp |
Protein Length | 571 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640893241 |
Product | AAA ATPase |
Protein accession | YP_001431224 |
Protein GI | 156741095 |
COG category | [R] General function prediction only |
COG ID | [COG1106] Predicted ATPases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0989005 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCACCT CATTGACCAT CAGAAACTTC AAACTGTTCC CCGATGTGGC TATCGATCTG GGCGAACGAG TCGTCTTCAT CGGACCGAAC AATTCCGGCA AAACATCGGC GCTTCAGGCG CTTGCCTTAT GGGATGTCGG CGTGAAACGC TGGCTGGAAC GGCGAGGAAG CGGCACCATT CCGGCTGAAC GGGCTGGCGT GACGATCAAC CGAAAGGATT TGCTGGCTAT TCCCATACCT GCCGCAAATT TGTTGTGGCG CGACCTGCGC GTGCGCGAAG GAGAGCGACA CGACGGCAAA CCACGCACGC GCAATGTGCG GATCGAGATC GGCGTTAAGG GAAGCGATGA GCAGCAATGG GAATGCCGGT TAGAATTCGA CTATGCGAAT GAAGAATCGA TCTATTGCCG TCCTCCGGTT GGTCCCGACA ACGCGCGCCT GGCGGTGCCG GCGCATCTCA AGAACCTTCA GGTCGCCTAT CTGCCACCGA TGTCGGGACT GGCAGCCCGT GAAGATCGGC TGGAAATGGG ATCGATCCGG GTGCGACTGG GTGAGGGACG AACCGCAGAA GTGCTCAGAA ACCTGTGCTG GCAGGTGGTG CAAAGCGAAA ACGGCGACCA AAAGTGGCAG GAGATTTGTG AGTCTATCGA ACGGCTCTTC GGCTCCCGGT TGCTTCCTCC CCAATACATC GCCGAACGAG GCGAGATTAC GTTAACCTAT CGCACCCGTT CTGGCACGAT GCTCGACATT TCCTCCAGCG GGCGCGGCGA GCAGCAGACT CTCCTCTTGC TGGCGCATAT GGCTGTCCAT ACCGGCGCCG TGCTGCTGTT GGACGAACCG GACGCGCATT TGGAGATTCT ACGGCAACGG CAGATCTATG ATGTGTTGAC CAGGCAGGCT GAGCGGACAA AAAGCCAACT CATTGCTACC AGTCACTCGG AAGTGGTAAT GAACGAAGCT GCCCAGCGGG ATGTGGTGGT CGCCTTTGTC GGTCGCCCGC ATCGAATCGA TGATCGAGGA TCGCAGGTGT TGAGATCGTT GCGCGACATC GGGTTTGAAC AGTACTATCT GGCTGAAACG ATGGGCTGGG TGCTCTATCT GGAAGGATCG ACCGATCTGG CCATTCTGCG CGCCTTTGCG GAACGGATCA ACCATCCGGC GCGATCGGTC CTGGAGCGTC CCTTCGTGTG TTACGTCGCC AATCAACCCC GCAAAGCGCA GGAACATTTT TATGCCCTCC GCGAGGCAAA ACCCGATCTC GTCGGCATCG CCATCTACGA TCGGTTGGCG CGTGGTGTGC CGGACGATCC GCATCTCAGG CAGCATATGT GGTCGCGCAA TGAACTGGAA AATTATCTCT GCCAGCGCGA AACGCTGCTG ACCTTCGCCG TCAGCAAAGG CGAGGAGTCC GAGGGAGCGC TCTTCACCGC CTCCTGGCGC GACGCGATGG CGCAGGCAAT CCAGGAGATC GAGCAGGCGC TGCGGCTGCT CGGCAAGGAT CCGTGGGGAC CTGACATCAA AGCCAGCGAT GAGTTTCTCA CGCCGCTGTT TCAGCGGTTT TTTCAGATTC GTGATCGACC GAATGAGATG AACAAGACGA ACTTCCACGT CCTGGCTGCG TTTGTGTCGC CAGAAGCGAT TGACGACGAA ATCCGGCGGG CGCTCGACGC GATCGGCGAG GTGGCGCAGA TGGCTCGTCC TCGCGTCGAT TCGTGA
|
Protein sequence | MLTSLTIRNF KLFPDVAIDL GERVVFIGPN NSGKTSALQA LALWDVGVKR WLERRGSGTI PAERAGVTIN RKDLLAIPIP AANLLWRDLR VREGERHDGK PRTRNVRIEI GVKGSDEQQW ECRLEFDYAN EESIYCRPPV GPDNARLAVP AHLKNLQVAY LPPMSGLAAR EDRLEMGSIR VRLGEGRTAE VLRNLCWQVV QSENGDQKWQ EICESIERLF GSRLLPPQYI AERGEITLTY RTRSGTMLDI SSSGRGEQQT LLLLAHMAVH TGAVLLLDEP DAHLEILRQR QIYDVLTRQA ERTKSQLIAT SHSEVVMNEA AQRDVVVAFV GRPHRIDDRG SQVLRSLRDI GFEQYYLAET MGWVLYLEGS TDLAILRAFA ERINHPARSV LERPFVCYVA NQPRKAQEHF YALREAKPDL VGIAIYDRLA RGVPDDPHLR QHMWSRNELE NYLCQRETLL TFAVSKGEES EGALFTASWR DAMAQAIQEI EQALRLLGKD PWGPDIKASD EFLTPLFQRF FQIRDRPNEM NKTNFHVLAA FVSPEAIDDE IRRALDAIGE VAQMARPRVD S
|
| |