Gene Rcas_1107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1107 
Symbol 
ID5538573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1433177 
End bp1434892 
Gene Length1716 bp 
Protein Length571 aa 
Translation table11 
GC content58% 
IMG OID640893241 
ProductAAA ATPase 
Protein accessionYP_001431224 
Protein GI156741095 
COG category[R] General function prediction only 
COG ID[COG1106] Predicted ATPases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0989005 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCACCT CATTGACCAT CAGAAACTTC AAACTGTTCC CCGATGTGGC TATCGATCTG 
GGCGAACGAG TCGTCTTCAT CGGACCGAAC AATTCCGGCA AAACATCGGC GCTTCAGGCG
CTTGCCTTAT GGGATGTCGG CGTGAAACGC TGGCTGGAAC GGCGAGGAAG CGGCACCATT
CCGGCTGAAC GGGCTGGCGT GACGATCAAC CGAAAGGATT TGCTGGCTAT TCCCATACCT
GCCGCAAATT TGTTGTGGCG CGACCTGCGC GTGCGCGAAG GAGAGCGACA CGACGGCAAA
CCACGCACGC GCAATGTGCG GATCGAGATC GGCGTTAAGG GAAGCGATGA GCAGCAATGG
GAATGCCGGT TAGAATTCGA CTATGCGAAT GAAGAATCGA TCTATTGCCG TCCTCCGGTT
GGTCCCGACA ACGCGCGCCT GGCGGTGCCG GCGCATCTCA AGAACCTTCA GGTCGCCTAT
CTGCCACCGA TGTCGGGACT GGCAGCCCGT GAAGATCGGC TGGAAATGGG ATCGATCCGG
GTGCGACTGG GTGAGGGACG AACCGCAGAA GTGCTCAGAA ACCTGTGCTG GCAGGTGGTG
CAAAGCGAAA ACGGCGACCA AAAGTGGCAG GAGATTTGTG AGTCTATCGA ACGGCTCTTC
GGCTCCCGGT TGCTTCCTCC CCAATACATC GCCGAACGAG GCGAGATTAC GTTAACCTAT
CGCACCCGTT CTGGCACGAT GCTCGACATT TCCTCCAGCG GGCGCGGCGA GCAGCAGACT
CTCCTCTTGC TGGCGCATAT GGCTGTCCAT ACCGGCGCCG TGCTGCTGTT GGACGAACCG
GACGCGCATT TGGAGATTCT ACGGCAACGG CAGATCTATG ATGTGTTGAC CAGGCAGGCT
GAGCGGACAA AAAGCCAACT CATTGCTACC AGTCACTCGG AAGTGGTAAT GAACGAAGCT
GCCCAGCGGG ATGTGGTGGT CGCCTTTGTC GGTCGCCCGC ATCGAATCGA TGATCGAGGA
TCGCAGGTGT TGAGATCGTT GCGCGACATC GGGTTTGAAC AGTACTATCT GGCTGAAACG
ATGGGCTGGG TGCTCTATCT GGAAGGATCG ACCGATCTGG CCATTCTGCG CGCCTTTGCG
GAACGGATCA ACCATCCGGC GCGATCGGTC CTGGAGCGTC CCTTCGTGTG TTACGTCGCC
AATCAACCCC GCAAAGCGCA GGAACATTTT TATGCCCTCC GCGAGGCAAA ACCCGATCTC
GTCGGCATCG CCATCTACGA TCGGTTGGCG CGTGGTGTGC CGGACGATCC GCATCTCAGG
CAGCATATGT GGTCGCGCAA TGAACTGGAA AATTATCTCT GCCAGCGCGA AACGCTGCTG
ACCTTCGCCG TCAGCAAAGG CGAGGAGTCC GAGGGAGCGC TCTTCACCGC CTCCTGGCGC
GACGCGATGG CGCAGGCAAT CCAGGAGATC GAGCAGGCGC TGCGGCTGCT CGGCAAGGAT
CCGTGGGGAC CTGACATCAA AGCCAGCGAT GAGTTTCTCA CGCCGCTGTT TCAGCGGTTT
TTTCAGATTC GTGATCGACC GAATGAGATG AACAAGACGA ACTTCCACGT CCTGGCTGCG
TTTGTGTCGC CAGAAGCGAT TGACGACGAA ATCCGGCGGG CGCTCGACGC GATCGGCGAG
GTGGCGCAGA TGGCTCGTCC TCGCGTCGAT TCGTGA
 
Protein sequence
MLTSLTIRNF KLFPDVAIDL GERVVFIGPN NSGKTSALQA LALWDVGVKR WLERRGSGTI 
PAERAGVTIN RKDLLAIPIP AANLLWRDLR VREGERHDGK PRTRNVRIEI GVKGSDEQQW
ECRLEFDYAN EESIYCRPPV GPDNARLAVP AHLKNLQVAY LPPMSGLAAR EDRLEMGSIR
VRLGEGRTAE VLRNLCWQVV QSENGDQKWQ EICESIERLF GSRLLPPQYI AERGEITLTY
RTRSGTMLDI SSSGRGEQQT LLLLAHMAVH TGAVLLLDEP DAHLEILRQR QIYDVLTRQA
ERTKSQLIAT SHSEVVMNEA AQRDVVVAFV GRPHRIDDRG SQVLRSLRDI GFEQYYLAET
MGWVLYLEGS TDLAILRAFA ERINHPARSV LERPFVCYVA NQPRKAQEHF YALREAKPDL
VGIAIYDRLA RGVPDDPHLR QHMWSRNELE NYLCQRETLL TFAVSKGEES EGALFTASWR
DAMAQAIQEI EQALRLLGKD PWGPDIKASD EFLTPLFQRF FQIRDRPNEM NKTNFHVLAA
FVSPEAIDDE IRRALDAIGE VAQMARPRVD S