| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1098 |
|---|
| Symbol | |
|---|
| ID | 5538564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1421414 |
|---|
| End bp | 1422832 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640893232 |
|---|
| Product | UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|---|
| Protein accession | YP_001431215 |
|---|
| Protein GI | 156741086 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
|---|
| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.621506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCTGA ACGGGAAGCG CGCACTGGTC ATGGGGCTTG GCGTTCACGG CGGCGGGGTC
GGCGTTGCGC GCTTCCTTGC GCTCCAGGGC GCGGAGGTGA CGGTTACCGA TCTGCGACCG
CCCGACGACC TGCGTGCATC ACTCGACGCG CTCGCCGGAC TGCCGATCCG CTTCGTGCTC
GGCGAGCATC GGGAAGCCGA TTTTCGTCAG GCTGAGATTG TGGTGCGCAA CCCGGCTGTG
CCGCCAACAT CGCGCTACCT GCAAATCGCG CGCGCGGCAG GCGCAGCCAT CGAAATGGAA
ATGACCCTCT TCTTCCGGCT CTGCCCTGGA CCAATCCTCG GCGTCACCGG GACAAAAGGC
AAAACGACGA CAACGTTGCT CCTCGGTGCG ATGCTGCGGG AACAGTTCCC GGATACCGTG
GTTGCCGGCA ATCTGCGCAT TTCTGCACTC GATCAGTTGC CTTCGATCAG CGCCACCACC
CCGGTGGTGC TGGAGCTGTC GTCGTTCGTG CTCGAGGGAT TGGGCGAAGC CGGGTTAAGT
CCGAAGATCG CCTGCATCAC CACGATTGCG CCGGATCATC TCGACCGGCA CGGCACGATG
GAGGCGTACA TTCAGGCAAA AGAAGAAATC TGGCGACATC AGCGCCCCGG TGATCCTGTG
GTGCTGTGTG CCGACTCGCC GATCATGCGC GCAATGGCGG TCGTTGATCG GCGTCCTGGT
GATATGGTCT GGTTCGCTGG CGCAAAAGGA TCGGACGTCT ATCGCCTGAA AGGAGATCGC
AGAGCGTTTT GGCGCGGCGA TGAATTGATC TGGCATGATC GGTCAACCGA AGGAAGCATC
ACCCATACGG TCATCTGCAC CAGGGACGAT GTGCGACTGC CCGGCGCCCA CAATCTGGCG
AATATTGCGG CTGCAACCGC CGCCGCCTGC GCCTTCGGCA TCGCTCCTGA GCACATCCGG
CGCGCTGTGC GCGCCTTTGC CGGCGTCGAG CACCGGCTTG AGTTCGTCCG CGAACTCGAT
GGCGTGTGCT ATATCAACGA CACAGCAGCA ACAGCGCCCG AAGCAGCCAT TGCTGCACTC
CGCACCTTCG ACGCCCCAAT CGTGTTGATC GCGGGCGGCG CCGATAAGAA TCTGCCGTTC
GACGCTTTTG CGCGCGAGAT CGCACAGCGC GCCAGTGCAG TGATCCTGCT CCAGGGATCC
GCGACGCCGA AGCTGCTGGA TGCGTTGCGC GCGGCGCGCG CCAGCGTCGC CATCCACGGA
CCATATGACG ATTTCGAGCA AGCACTCGAT ACTGCCCGTC GGATCGCTGC GCCTGGCGAA
ATTGTGCTCC TTTCGCCAGG ATGCGCCAGT TTTGGCATGT TCCGCAATGA GTTTCATCGT
GGCGACACAT TTCGCCGCAT CGTCCAGAGT TTTACGTGA
|
|---|
| Protein sequence | MHLNGKRALV MGLGVHGGGV GVARFLALQG AEVTVTDLRP PDDLRASLDA LAGLPIRFVL
GEHREADFRQ AEIVVRNPAV PPTSRYLQIA RAAGAAIEME MTLFFRLCPG PILGVTGTKG
KTTTTLLLGA MLREQFPDTV VAGNLRISAL DQLPSISATT PVVLELSSFV LEGLGEAGLS
PKIACITTIA PDHLDRHGTM EAYIQAKEEI WRHQRPGDPV VLCADSPIMR AMAVVDRRPG
DMVWFAGAKG SDVYRLKGDR RAFWRGDELI WHDRSTEGSI THTVICTRDD VRLPGAHNLA
NIAAATAAAC AFGIAPEHIR RAVRAFAGVE HRLEFVRELD GVCYINDTAA TAPEAAIAAL
RTFDAPIVLI AGGADKNLPF DAFAREIAQR ASAVILLQGS ATPKLLDALR AARASVAIHG
PYDDFEQALD TARRIAAPGE IVLLSPGCAS FGMFRNEFHR GDTFRRIVQS FT
|
|---|
| |