| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1093 |
|---|
| Symbol | |
|---|
| ID | 5538559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1415993 |
|---|
| End bp | 1417423 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640893227 |
|---|
| Product | UDP-N-acetylmuramate--alanine ligase |
|---|
| Protein accession | YP_001431210 |
|---|
| Protein GI | 156741081 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
[TIGR01082] UDP-N-acetylmuramate--alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACTATC ATATCGTTGG CATTGCAGGC GCAGGAATGA GCGCCATTGC CCATATCCTG
CTGGATCAGG GGCACACGGT AAGCGGTTCG GATCTCCAGC AGAACACGCT CACGGCTGCG
CTCGAGCAGC GTGGCGCCCG CATCCGGTAC GGACACGAAC CTGCCTTTGT TGGAGATGCC
GACCGGTTGG TGGCGACATC CGCCGTTCAG GATGAGCATA TCGAACTGGT TGAAGCGCGC
AAACGCGGCA TTCCAGTGCT CCGGCGCGCC GATCTCTGGC GCGAGTGGTC GCATGGGCGG
CAGGTTGTGG CGGTGGCCGG CACGCACGGC AAAACAACGA CGACGGCGCT GATTGCGCTC
ATGCTGACTC GCGCCGGTAT CGCCCCTGGT TTCCTGATCG GCGGAGAAAC CCCCGATCTC
GGCGTCAATG CTCGCTGGGG CAACCCTGCT GCGCCGCTCG TGGTTGAAGC CGATGAATAT
GATCGAACGT TTCTGGCGCT CACGCCTGAT ATCGCCATCA TCACGAACGT CGAATGGGAG
CATGTCGATA TCTATCCATC GCCAGACGAG TACGAAGCGG CGTTTCGCAC ATTTGCCCGA
CAGGTGGCGC ACCCGCAGCG CCTGATCGTC TGCGGTGACA ATGCTGGCGC GCGGCGGGTC
GTCGGTCATC CTGATGCGCA ACAGTACGGC ATCGAAGAAG CCATTGCCCG GAATCCGGCA
TCCTGCCGCC TGGCGCTCAT GGACTGGATG GCTGCGAATG TGCGTTACGA TGGGTCGATG
ACCCATTTCG ATCTCTGGCG CTACGACCGG CGCACCTGTG GTACACGACT CGAGGGCATG
TACACGATGC GGTTGGTTGG CGATCACAAC GTGCAGAATG CGCTGGCAGC CATCGCAGCC
GCGACAACGC TGGGGATTGA TCGAACCGCG ATAGGCGCTG CGCTCGCCGA ATACCGTGGC
GCGCGGCGTC GCTTCGATAT TAAAGGCGAA GTGAACGGCA TCACGGTGAT TGACGATTAT
GCGCACCATC CGACCGAAGT GCGCGCAACT CTGGCTGCGG CGCGTGCGCG CTTCCCACAG
CATCGCATCG TCGTTTACCT GCAACCACAT ACATTTTCGC GCACGTATGC GATGCTTGAT
AACTGGACGC ATGCATTCGA CGCGGCAGAT ATCGTGCGGA TCGGCGATGT CTACCCGGCG
CGTGAAACGG GCGAACCGCG CGCTGCGGCT CGCGCGCTTG CCGGGCGCAT TGCGCATCCT
GATGTTGAGG TTGTCGGAGA CGTAGCGACC GCCACAGCAA CGATCACGGC ATTGTTGCAA
CCCGGTGATC TCCTGTTGAC CCTTGGCGCA GGCGATGGAT ATCGTGTGGG TGAGATGGCG
CTCCTGGCAT TGGGGCAGGC GGACGATCAA TCGGAATCGA GCGAGACGTG A
|
|---|
| Protein sequence | MHYHIVGIAG AGMSAIAHIL LDQGHTVSGS DLQQNTLTAA LEQRGARIRY GHEPAFVGDA
DRLVATSAVQ DEHIELVEAR KRGIPVLRRA DLWREWSHGR QVVAVAGTHG KTTTTALIAL
MLTRAGIAPG FLIGGETPDL GVNARWGNPA APLVVEADEY DRTFLALTPD IAIITNVEWE
HVDIYPSPDE YEAAFRTFAR QVAHPQRLIV CGDNAGARRV VGHPDAQQYG IEEAIARNPA
SCRLALMDWM AANVRYDGSM THFDLWRYDR RTCGTRLEGM YTMRLVGDHN VQNALAAIAA
ATTLGIDRTA IGAALAEYRG ARRRFDIKGE VNGITVIDDY AHHPTEVRAT LAAARARFPQ
HRIVVYLQPH TFSRTYAMLD NWTHAFDAAD IVRIGDVYPA RETGEPRAAA RALAGRIAHP
DVEVVGDVAT ATATITALLQ PGDLLLTLGA GDGYRVGEMA LLALGQADDQ SESSET
|
|---|
| |