Gene Rcas_1064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1064 
Symbol 
ID5538530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1380914 
End bp1381945 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content60% 
IMG OID640893200 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001431183 
Protein GI156741054 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGATA CTTCGACCGA CCTGATTCAG GTGCGCAACC TGAAGATGCA TTTTCCGGTG 
ATGAAGGGCG CGATTATCAA GCGCACCGTC GGGCATGTCA AAGCGGTTGA CGGAGTGACG
TTCTCGATCA AGCGCGGCGA GACGTTAGGG CTTGTGGGAG AGAGCGGATG CGGCAAATCG
ACCACCGGAC GCGCCATTCT GCAACTCTAC AAGCCAACCG CCGGCGAAGT GATCTTCCAG
GGCGCCGATC TGACCCGTCT TCAGGGTGAA GAGTTGCGCC GCATGCGGCG TAAGGTGCAA
ATGATCTTTC AGGACCCGTA TGCTTCGCTC AATCCGCGGA TGACGGTCGG CGACATTATC
GGCGAGCCGA TTGCCGTGCA CAATCTGCGC CAGGGAAAGG CTGCCATCCG TGAACGGGTG
CAGGAATTGC TCGAACTCGT CGGTCTCAAT CCGTACTTTA TCAACCGCTA CCCCCACGAA
TTCTCCGGCG GGCAGCGGCA GCGCATCGGC ATCGCGCGCG CGCTGGCGGT CGAACCGGAG
TTCGTGGTGT GCGACGAGCC GGTGTCGGCA CTCGATGTGT CGATCCAGGC GCAGGTGCTT
AATCTGCTCG AAGACCTTCA GCATCGCCTG GGTTTGACGT ACCTGTTCAT CGCGCACGGT
CTGGCAGTCG TAAAGCATAT CAGCGACCGG GTGGCAGTGA TGTATTTGGG GAAGGTCGTC
GAACTGGCGG AGGGAAAGAC ACTCTACGCC ATGCCGATGC ATCCCTACAC GCAGGCGCTC
CTGTCCGCTG CTCCCATTCC CGACCCGACG GTCGAGCGGA AACGGCAACG CATCATCCTG
GAAGGCGATG TGCCAAGTCC GCTCAATCCA CCTCCGGGAT GCCATTTTCA CACCCGTTGC
CCGATTGCCA TCGACCGCTG CAAGGTCGAG GAGCCGCCCT TCGAGGATTA CGGTGATGGG
CATTTCGTCG CCTGCTGGCG TGCGCGCGAG TCGATTGAGT TGATGGAACG GCACGCGGTG
CGTCCGTCGT AG
 
Protein sequence
MSDTSTDLIQ VRNLKMHFPV MKGAIIKRTV GHVKAVDGVT FSIKRGETLG LVGESGCGKS 
TTGRAILQLY KPTAGEVIFQ GADLTRLQGE ELRRMRRKVQ MIFQDPYASL NPRMTVGDII
GEPIAVHNLR QGKAAIRERV QELLELVGLN PYFINRYPHE FSGGQRQRIG IARALAVEPE
FVVCDEPVSA LDVSIQAQVL NLLEDLQHRL GLTYLFIAHG LAVVKHISDR VAVMYLGKVV
ELAEGKTLYA MPMHPYTQAL LSAAPIPDPT VERKRQRIIL EGDVPSPLNP PPGCHFHTRC
PIAIDRCKVE EPPFEDYGDG HFVACWRARE SIELMERHAV RPS