Gene Rcas_1062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1062 
Symbol 
ID5538528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1378845 
End bp1379855 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content60% 
IMG OID640893198 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001431181 
Protein GI156741052 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCAA CTGTCATGCA GCGCAGCGTG TCGGGTGATA CGCTGCTGGA AGTCAATAAT 
CTGGTCAAGC ACTTCCCGAT CAAGGGCGGT ATTCTCCGCC GCACGGTCGC GGTCGTTAAG
GCGGTCGACG GCGTCAGTTT CTCGCTCAAA CGCGGTGAGA CGCTGGGGTT GGTCGGTGAG
AGCGGGTGTG GCAAAACGAC GACCGGACGC ACTATTCTGC GTCTTGAGAA GGCAACCGAT
GGCGAGGTGA TCTTTGATGG GAAGGATGTG CTCGCCGCTT CTGGCAGTCA GTTGAAGGCG
TTGCGCCGCG ATATGCAGAT CGTCTTCCAG GACCCGTATG CCTCGCTCGA CCCGCGCATG
ACGATTGGCG AGAGTGTGGC GGAAGGGTTA ACCATCCACG GCATTGGCAG CAAAGTCGAG
CGGGTCGAGC GGGTGCGCGA AGTGCTGGCG AAGGTCGGTA TGCATCCGAG CCATATGGAG
CGCTTTCCGC ACGAGTTCTC CGGCGGGCAG CGGCAGCGCA TCGGCATTGC GCGCGCGCTG
GTGATGAACC CCAAGTTGAT CGTGTGCGAT GAGCCGGTGT CGGCGCTCGA TGTGTCGATC
CAGTCGCAGG TGCTCAACCT GCTGCGCAAT CTGCAACAGG AATTCGGGCT GACCTACCTG
TTCATCGCGC ATAACCTCAG CGTGGTTGAG CATATCAGCA ATCGCGTGGG GGTGATGTAC
CTGGGGAAGA TGGTCGAATT GGCGGACCGC ACGGAACTTT TCCGCCGTCC GCTCCATCCG
TATACGAAGG CGTTGATCTC GGCCATTCCA ATTCCGAACC CCAACATTCG GCGTGAACGG
ATTATTTTGC AGGGTGATGT GCCCAGCCCG ATCAACCCGC CGAAGGGGTG CCGCTTCCAT
CCACGTTGCT GGATGGCGCG CGATATTTGC CGCGAGGTCG AACCCGCGTT CGAGGAGAAA
ATGCCTGGCC ACTGGTCGGC ATGTCATTTC GCCCAAGACG TTTCACCATA A
 
Protein sequence
MMATVMQRSV SGDTLLEVNN LVKHFPIKGG ILRRTVAVVK AVDGVSFSLK RGETLGLVGE 
SGCGKTTTGR TILRLEKATD GEVIFDGKDV LAASGSQLKA LRRDMQIVFQ DPYASLDPRM
TIGESVAEGL TIHGIGSKVE RVERVREVLA KVGMHPSHME RFPHEFSGGQ RQRIGIARAL
VMNPKLIVCD EPVSALDVSI QSQVLNLLRN LQQEFGLTYL FIAHNLSVVE HISNRVGVMY
LGKMVELADR TELFRRPLHP YTKALISAIP IPNPNIRRER IILQGDVPSP INPPKGCRFH
PRCWMARDIC REVEPAFEEK MPGHWSACHF AQDVSP