Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1062 |
Symbol | |
ID | 5538528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1378845 |
End bp | 1379855 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640893198 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_001431181 |
Protein GI | 156741052 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGGCAA CTGTCATGCA GCGCAGCGTG TCGGGTGATA CGCTGCTGGA AGTCAATAAT CTGGTCAAGC ACTTCCCGAT CAAGGGCGGT ATTCTCCGCC GCACGGTCGC GGTCGTTAAG GCGGTCGACG GCGTCAGTTT CTCGCTCAAA CGCGGTGAGA CGCTGGGGTT GGTCGGTGAG AGCGGGTGTG GCAAAACGAC GACCGGACGC ACTATTCTGC GTCTTGAGAA GGCAACCGAT GGCGAGGTGA TCTTTGATGG GAAGGATGTG CTCGCCGCTT CTGGCAGTCA GTTGAAGGCG TTGCGCCGCG ATATGCAGAT CGTCTTCCAG GACCCGTATG CCTCGCTCGA CCCGCGCATG ACGATTGGCG AGAGTGTGGC GGAAGGGTTA ACCATCCACG GCATTGGCAG CAAAGTCGAG CGGGTCGAGC GGGTGCGCGA AGTGCTGGCG AAGGTCGGTA TGCATCCGAG CCATATGGAG CGCTTTCCGC ACGAGTTCTC CGGCGGGCAG CGGCAGCGCA TCGGCATTGC GCGCGCGCTG GTGATGAACC CCAAGTTGAT CGTGTGCGAT GAGCCGGTGT CGGCGCTCGA TGTGTCGATC CAGTCGCAGG TGCTCAACCT GCTGCGCAAT CTGCAACAGG AATTCGGGCT GACCTACCTG TTCATCGCGC ATAACCTCAG CGTGGTTGAG CATATCAGCA ATCGCGTGGG GGTGATGTAC CTGGGGAAGA TGGTCGAATT GGCGGACCGC ACGGAACTTT TCCGCCGTCC GCTCCATCCG TATACGAAGG CGTTGATCTC GGCCATTCCA ATTCCGAACC CCAACATTCG GCGTGAACGG ATTATTTTGC AGGGTGATGT GCCCAGCCCG ATCAACCCGC CGAAGGGGTG CCGCTTCCAT CCACGTTGCT GGATGGCGCG CGATATTTGC CGCGAGGTCG AACCCGCGTT CGAGGAGAAA ATGCCTGGCC ACTGGTCGGC ATGTCATTTC GCCCAAGACG TTTCACCATA A
|
Protein sequence | MMATVMQRSV SGDTLLEVNN LVKHFPIKGG ILRRTVAVVK AVDGVSFSLK RGETLGLVGE SGCGKTTTGR TILRLEKATD GEVIFDGKDV LAASGSQLKA LRRDMQIVFQ DPYASLDPRM TIGESVAEGL TIHGIGSKVE RVERVREVLA KVGMHPSHME RFPHEFSGGQ RQRIGIARAL VMNPKLIVCD EPVSALDVSI QSQVLNLLRN LQQEFGLTYL FIAHNLSVVE HISNRVGVMY LGKMVELADR TELFRRPLHP YTKALISAIP IPNPNIRRER IILQGDVPSP INPPKGCRFH PRCWMARDIC REVEPAFEEK MPGHWSACHF AQDVSP
|
| |