| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1054 |
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| Symbol | |
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| ID | 5538520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1368865 |
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| End bp | 1369800 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640893190 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001431173 |
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| Protein GI | 156741044 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.597722 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCAGA TTGCCGATCG CCAGGCGGAG CGGCGCGCGC GCGAGGCGCA GTCTCATCGG
GAGGAGTTAG TCGAGCGCAT TGCGCGGGCG ATTCGTCAGG ATGGGGAGAT CGAGCCATTG
CCGGGGCTTC ATTTCTTCCG CCTTTCCGCC ACGCGCGGGC TGGTGCACAG CGTGAGTCGC
CCCGCCTTTT GCATCATCGC CCAGGGGAGC AAGGAACTCT TTCTTGGCGA CCGCCACTAC
CGCTACGACC CCTATCACTA CCTGCTTGTC ACTGTCGATC TGCCTGGCGT CAGTCGCGTG
CTGGAGGTGT CGCCGACGCG CCCCTACCTC AGCCTGCGCA TCGACCTGTC GCCGGCGCTG
GTTGGCGCAG TCATGGCGGA GAGTGGGTAC ACCGCCCCAC CGAGCGTCGC CAGAGTTGGC
GCGGTGGATG TCAGTTTGCT GGATGGGGAG TTGCTCGATG CTGTCGTGCG GTTGGTGCGG
CTCACCGAGG CGCCTGCCGC TGACGTACAG GCGCTCAAGC CGCTGATTGT GCGAGAAATC
GTCTATCGTC TGCTGGTGGG CGATCAGGGC GCGCGGTTGC GCCATCTGGC GGGTGTGGGA
GGCTCCATCT CCCACATTGC GCGCGCCGTA GAGTGCATCC GGCGGAACTT CCACCAGCCT
CTGCGCATCG AGCAACTGGC GCGCGAGGCG GGCATGAGCG TCTCTGGCTT TCACCACTAT
TTCAAAGCCG TCACCGGCAT GACGCCGCTG CAATTTCAGA AGCAACTGCG CCTGCACGAA
GCGCGACGAC TCATGATTGG GGAAAACCTG CCCGCGATCG ACGCCGCCTA CCGCGTCGGC
TACCAGGACG CCTCCCATTT TAACCGGGAG TACAAACGGC TCTTCGGTGC GCCGCCGCTG
CGCGATGTGC AACGGCTGCG CGACGCAATG GCGTGA
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| Protein sequence | MQQIADRQAE RRAREAQSHR EELVERIARA IRQDGEIEPL PGLHFFRLSA TRGLVHSVSR
PAFCIIAQGS KELFLGDRHY RYDPYHYLLV TVDLPGVSRV LEVSPTRPYL SLRIDLSPAL
VGAVMAESGY TAPPSVARVG AVDVSLLDGE LLDAVVRLVR LTEAPAADVQ ALKPLIVREI
VYRLLVGDQG ARLRHLAGVG GSISHIARAV ECIRRNFHQP LRIEQLAREA GMSVSGFHHY
FKAVTGMTPL QFQKQLRLHE ARRLMIGENL PAIDAAYRVG YQDASHFNRE YKRLFGAPPL
RDVQRLRDAM A
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