Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1040 |
Symbol | |
ID | 5538506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1357039 |
End bp | 1357689 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640893177 |
Product | LuxR family transcriptional regulator |
Protein accession | YP_001431160 |
Protein GI | 156741031 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.723479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCACC CGTTGACGCT CTTCCTTTTC GACCCGCATG CCCTGGCGAC TTCAGCGGTG CGCGCGCGGT TGACCGCCGC GCCGGATCTC GCGCTCCTGG CGGTTGCGCC CGACCTCGCC GCGCTGCCGG ACACCGCCGA GCCGCCTGCC CATGCGTTTC TCGTGCTCAC CGACTGGCGT GACGGCGCGC CGCTGACGCT TGCGTCCGCC CTACGCGCGC GCTGGCCGCG CCCCGCGCCG GTGATCTGGA GCGCGCAGTC GCATCCGCTG CGCCTGGTCG CGGCGCTCAC CGCAGGCGCG GGCGGGTATG TGGACGTAGC GGCTCCGCTG CCCGATCTGC TGACGGTGCT GCGGGTGGCG CAGCGCGGCG GTGCGGCGTG CTGCGCGCCA ACCGCGTCTC AGTTGCGCGC GCGGCTGTTC GGGTGTCCGC GCCTCACCGA CCGCGAAGCG CAGGTGGCGG CGCTGATCGC CGCCGGGTAC GCCAACGCGA CGATTGCCGC AACCCTGGGG CTGACCGTGC GCGGCGTCGA AGCGCATGTC CATCGGCTCT GCCGCAAGAC CGGAGCGCGC ACGCGGGTCG ATCTAGCGCG CTGGTGGCTG CTGCGCCCGT GGCTATGCGG GACGGAGGGT GCGGTGACGG AGGGAGCGTG A
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Protein sequence | MDHPLTLFLF DPHALATSAV RARLTAAPDL ALLAVAPDLA ALPDTAEPPA HAFLVLTDWR DGAPLTLASA LRARWPRPAP VIWSAQSHPL RLVAALTAGA GGYVDVAAPL PDLLTVLRVA QRGGAACCAP TASQLRARLF GCPRLTDREA QVAALIAAGY ANATIAATLG LTVRGVEAHV HRLCRKTGAR TRVDLARWWL LRPWLCGTEG AVTEGA
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