Gene Rcas_1040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1040 
Symbol 
ID5538506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1357039 
End bp1357689 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content74% 
IMG OID640893177 
ProductLuxR family transcriptional regulator 
Protein accessionYP_001431160 
Protein GI156741031 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.723479 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCACC CGTTGACGCT CTTCCTTTTC GACCCGCATG CCCTGGCGAC TTCAGCGGTG 
CGCGCGCGGT TGACCGCCGC GCCGGATCTC GCGCTCCTGG CGGTTGCGCC CGACCTCGCC
GCGCTGCCGG ACACCGCCGA GCCGCCTGCC CATGCGTTTC TCGTGCTCAC CGACTGGCGT
GACGGCGCGC CGCTGACGCT TGCGTCCGCC CTACGCGCGC GCTGGCCGCG CCCCGCGCCG
GTGATCTGGA GCGCGCAGTC GCATCCGCTG CGCCTGGTCG CGGCGCTCAC CGCAGGCGCG
GGCGGGTATG TGGACGTAGC GGCTCCGCTG CCCGATCTGC TGACGGTGCT GCGGGTGGCG
CAGCGCGGCG GTGCGGCGTG CTGCGCGCCA ACCGCGTCTC AGTTGCGCGC GCGGCTGTTC
GGGTGTCCGC GCCTCACCGA CCGCGAAGCG CAGGTGGCGG CGCTGATCGC CGCCGGGTAC
GCCAACGCGA CGATTGCCGC AACCCTGGGG CTGACCGTGC GCGGCGTCGA AGCGCATGTC
CATCGGCTCT GCCGCAAGAC CGGAGCGCGC ACGCGGGTCG ATCTAGCGCG CTGGTGGCTG
CTGCGCCCGT GGCTATGCGG GACGGAGGGT GCGGTGACGG AGGGAGCGTG A
 
Protein sequence
MDHPLTLFLF DPHALATSAV RARLTAAPDL ALLAVAPDLA ALPDTAEPPA HAFLVLTDWR 
DGAPLTLASA LRARWPRPAP VIWSAQSHPL RLVAALTAGA GGYVDVAAPL PDLLTVLRVA
QRGGAACCAP TASQLRARLF GCPRLTDREA QVAALIAAGY ANATIAATLG LTVRGVEAHV
HRLCRKTGAR TRVDLARWWL LRPWLCGTEG AVTEGA