| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1027 |
|---|
| Symbol | |
|---|
| ID | 5538493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1339704 |
|---|
| End bp | 1341098 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640893166 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001431149 |
|---|
| Protein GI | 156741020 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCATA TGCGACTGTT CGTTCTTCTC GTCATCCTGA CACCTTTCGC ACTCTCATCA
TCCCCCGTTG TCGAGTCGGA GGAAATGACG TTTGCCGCCT ATCTGCCGCT GATCAATGTC
CCCGACACAC GAGTGCTCTG GGGGTACGAT CTGCGGGTAT CGCGCGGAGC GCAGGCTGAA
TCGCTGTTGC CGACGCTCCC TGCAACCTGG GCGCGCGCCG GCGATCTGGT GTGGGGTGCA
ATCGAAACGC AGCGCGGCGT CTATGACTGG GAAGCGGCAG CCGGGTTAGA AGCCAACATC
CGCCGGTTGC GCGCCGCCGG TGTCGAGCCG ATTGTCCTGG TGCAGAGCGC CCCCGCATGG
GCGCGGCGTT TGCCGGATCG CGCGTGCAGC CCGGTTGCGC CCGAAGCCTA TGCAGACCTG
GCGCGGTTTG CCGCTGCGGT GGCGGCGCGC TACCGCAGCG GCGATCTTGC CGTGCGGTAC
TGGCAATTCT GGAATGAGCC GGATTTCACA CCCGCAGTCG CCGATACCAA AGGCATCGGG
TGTTGGAACA CCGGTGTTGC GCCGTGGTAT GGCGGCGATG CCTATGGCGC CGCGCTTCGT
GTGTTCGCAA ACGCGGTGCG CTCGGTCGTC CCTGGGGCGC AGATCATTGG CGGCAATTTT
GCCCATTTCT GGCCCGACGA CCGGCAGACG CTCGGTTTTC TGCGCGGTAT GATTGAAGGG
GGCGGTCTGG CATGTGACAT GATCGGCTTC TCCGGTTACA CACGCTGGGG CAGCGCCGAG
CGCATGACCT TGAAAGCGCA GAGTCTGCGC CGGACATTGG CGGCATATGG TCTCGCATGG
ATGCCGCTCG CCGCCGTGGA GGTCGCCGAC GTCTGCCCCG AAGGGCAGCC TTGCCCTCCT
GATTTCCATC AGGCGCAGGC AAACTACGCC GCCCGTATTT ACGCTCTTGC AATTGCACTG
AACCTGCGCG GCATTCTCTG GTATACCTTG CTGGAGCAGG GAGCGGGGTT CCAGCACAGT
CACCTGGCGG ACGTTGGGAG TAGCGGGGTG ACGCCACGAC CGGCGTTCTA TGCCTATCGC
AACGCAGCGT TGCTGCTCCA GGGTGCAGCG TATGCCGGTC CGCCATTGAA CGATGTGCGT
TTCGATCAGG AAGGCGTACC GCATATGCTC CGCTTTATTG CCCGCGATGG CGCACCATTG
TACGTCTTCT GGCGTCCCAC TGCGCAGGAC GAGGCGGGGT GGGGGCTTGT CACATCTTCT
GGGCGGCGGG CGACCTGCAT TTCGCATCTC GAACGCCCAA CACCCCTTGC CGTCGATTGC
TCTGATCAGG ACGGGGACGG ACTGATCCGA TTCACAGTCA GCGATGCACC AATCTACATC
CGTCTGGCGC CGTAG
|
|---|
| Protein sequence | MGHMRLFVLL VILTPFALSS SPVVESEEMT FAAYLPLINV PDTRVLWGYD LRVSRGAQAE
SLLPTLPATW ARAGDLVWGA IETQRGVYDW EAAAGLEANI RRLRAAGVEP IVLVQSAPAW
ARRLPDRACS PVAPEAYADL ARFAAAVAAR YRSGDLAVRY WQFWNEPDFT PAVADTKGIG
CWNTGVAPWY GGDAYGAALR VFANAVRSVV PGAQIIGGNF AHFWPDDRQT LGFLRGMIEG
GGLACDMIGF SGYTRWGSAE RMTLKAQSLR RTLAAYGLAW MPLAAVEVAD VCPEGQPCPP
DFHQAQANYA ARIYALAIAL NLRGILWYTL LEQGAGFQHS HLADVGSSGV TPRPAFYAYR
NAALLLQGAA YAGPPLNDVR FDQEGVPHML RFIARDGAPL YVFWRPTAQD EAGWGLVTSS
GRRATCISHL ERPTPLAVDC SDQDGDGLIR FTVSDAPIYI RLAP
|
|---|
| |