Gene Rcas_1001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1001 
Symbol 
ID5538467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1310118 
End bp1310993 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content63% 
IMG OID640893144 
Productalpha/beta hydrolase fold 
Protein accessionYP_001431127 
Protein GI156740998 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.11991 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCACG ATTTTCAATC CATGCGCATC CCAACCCGGG ACGCCGAGAT TCATCTGGTG 
CGCGGCGGGT CTGGTCCGCC GCTGTTGCTG CTTCACGGCT ACCCGCAGAC CCATCTGATG
TGGCGGAAGG TTGCGCCGCG GCTGGCTGCC GATTTCACCG TCATCGCAGC AGACCTGCGG
GGCTATGGCG ATAGCAGCAA GCCCCCCGGC GGCGCGGATC ACGCAGCGTA CAGCAAACGC
GCTATGGCGC AGGATATGGT TGAAGTGATG GATGCGCTCG GCTTCTCACG CTTCATGGTC
GCCGGTCACG ACCGCGGCGC GCGCGTCGTC CATCGCCTCT GCCGCGATCA CCCCGATGTC
GTGATCCGCG CTGCGGTGCT CGACATTGCA CCCACGCTCT TCATGTATAC CACTGCCGAC
CGCGCGTTCG CCGAAGCCTA CTACCACTGG TTCTTCCTGA TTCAGCCCTA CGACCTGCCA
GAACGACTGA TCGGCGCCGA CCCGAAGTAC TACCTGCGCA AAAAACTTGC CCACTGGGGA
CGCACGCCCT CCGCCTTCGA GCCAGACGTG TTCGCCGAAT ATGTGCGCTG CTTCAGCGAT
CCGGCGACGA TCCACGCGAC CTGCGAAGAT TATCGAGCGG CGGCGAGCAT CGATTTGCGC
CACGATGAAG CCGACTTGCA TGTGCCGATT GCCTGCCCGC TGCTGGCGCT CTGGGGAGCA
GAGGGGTTCA TTGGGAGACG ATACGATGTG CTGGCGGTCT GGCGGCAGCA CGCAGTCGAT
GTGCGCGGGC ACGCTGTGCC TGGCGGGCAC TATCTCCCCG AAGAAGCGCC GGAAGAAACG
TATGCCGCGC TACGGACATT TTTCGCTGAG ACGTAG
 
Protein sequence
MFHDFQSMRI PTRDAEIHLV RGGSGPPLLL LHGYPQTHLM WRKVAPRLAA DFTVIAADLR 
GYGDSSKPPG GADHAAYSKR AMAQDMVEVM DALGFSRFMV AGHDRGARVV HRLCRDHPDV
VIRAAVLDIA PTLFMYTTAD RAFAEAYYHW FFLIQPYDLP ERLIGADPKY YLRKKLAHWG
RTPSAFEPDV FAEYVRCFSD PATIHATCED YRAAASIDLR HDEADLHVPI ACPLLALWGA
EGFIGRRYDV LAVWRQHAVD VRGHAVPGGH YLPEEAPEET YAALRTFFAE T