| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0995 |
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| Symbol | |
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| ID | 5538461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1298947 |
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| End bp | 1301325 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893138 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_001431121 |
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| Protein GI | 156740992 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.37011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACTTCT TTATACAAGA CGATTGGAAA ATTGCACTTT TGAGCACTGC TGTCGAGTCG
ATGTCGGAAG CAGTGCTGAT GACCGATCCT GCGGGCAAGA TTCTGCTCCT GAACCGGCAG
TTCGAGGAAC TCTGGCGATT GACGCCGGGA TGGATGGAGA CGATCACCGC CCGTGACCGT
ATTCAGCAAC TGGCGCATCT GCTCTGCGAC CCCGATCAAT TCCTCAACCG TCTGGATGAG
GTATATGCGC ATCCGGACCT TGAGGCGCTC GATTGGTTGA CCCTGCGCGA TGGACGCATC
ATCGAACGAC ATACACGCGG ATTGCATCTT GAGGAACGCA TCATCGGCCG GATATGGGTC
TTTCGTAACA TCACATCCCG CGAATGGGCA CAGCGGGAAC TCAAAGTCAT GAAGCGCGTC
CTGGAAGCGC TCAATCGGAT TGTCGAACCG CAACGTCAGT TACAGGCAGG GGTCCAGGCG
CTGGCGCAGG AACTGGAGGC GCGCGCGGCG TGGCTCTGGG GGGTGGAAGG CAGTGACTTC
GCGCGTCTGC TGGCGCATTA TGGCGCTCGC GAACTGCGTA TCGACCTCAC GCCGCGCGCG
CCCGGCGATC CATGTGAATG TTTGCAACGA TTACTCGACC ATGGGTTTCC TGCAACCGCG
CATCCGATTG TCTGCCCACG CCTGGCGCAC CTCAATACTC CCGATCAGGA ACCGGCACGC
CATATCAGTG TGCCGATCTA TAGTCGCGAC CGTCCTCTGG CGATTCTGAA TCTGGTGCTC
CCATCTATTC AGCCATTCAA TGTCGCTGAG TTGCGCATGT TTGCCGCCAT TGCCAATCAA
TTCAGCGTCG CAATCGAACG CGCGCGCCTG TTTGAGTCGG TGCGCGAGGA ACAGCGCGCT
GCCGAGGTGC TACGCCAGGC GGCGGCAACG CTGAGCGCAT CGCTCGATTT CGAACAGGTG
CTCGACCACG TGCTCGATCA GATCGTCGCA CTGATGCCGT GTGATGGCGC GTCGGTGATG
CTGGTCGAAG GAACGCAGGC GCGAGTCGTG CGGGTCTATG GCTACGAAGC GCTCAGTGAC
GAAGCCGAGC GCGCGATCCA TACGGTGACA TTTGAGATTG CGCGCACACC AACCCTGCGA
CGCCTGCTCG AAACAAGGCA GCCCTGGATT ATCGGCGAAA CGCACAATAA TCCGGCATGG
GTGCGGATCG AATATGCGTT GCCGATTCGT TCCTGGTTGG GCGTGCCGGT CATCGTGCGT
CAGCAGGTGG TCGCCTTCAT TTGCGTTGAT AGTTTCGTTC CCTATGCGTA CCGTCCAGAG
CACGCCCGTC GCCTGGCAAC GCTCGCGTCG AGCGTGTCGC TCGCGTTGCA CAATGCGCAA
CTGTACGAAC AGACGAACGC TGCACTGGAG CGGGAGCGGC GTCTGAGCGA GCTCACCCGC
ACCATCAGCA GCGCGCTCGA CATCGAGGTT ATTCTGGACA CAGTCGTGCG GTTGTCAGTT
GAACTGGTGG GCGCCGATGC CGCCGTTTTG GGCTTGCTCT CCGCCGACCA CGCCGCGCTG
GTTCGAACGC ACACATTCAA TATGCCAGAA TCCCTGATGC AACACGTTCA GGGCGTCCAA
CCGGTCTGGA GCGCAGTCGA GACGCGCCAG AGCGTTATTC GCCATCACGT GATGCTCAAA
GCCGGGCGTG TCACGCATCA CATTCCGTCC GTGATAGGCA CACCAATTAT TGCTGGTGGG
AAGGCGCTAG GAGTGCTGGC AGTGTATCAT CTGCACAGAC AGCGCTTTTT CGGCGAGCAC
GACCGATCGA TGCTGGAAAT TGTCGGACAG CAGACCGGTG TTGCAATTAC CAATGCGCAT
TTATTTACCG AGACGCAGCG ACTGGCGACG ACCGACCACC TGACCGGGCT GTTCAATCGT
CACCACTTCT TTGCGCTGGC GCCGCGCGAA CTGGAGCGGG CGCGTCGCTA TCACCATCCC
CTGGCGCTGC TGGTTATCGA TGTTGATTAT TTCAAGACCA TCAACGACAC CTTTGGTCAT
AGTGCGGGTG ATGTCGTATT GCGCAGCGTT GCGAAACAGA TGCAACGCGA ACTGCGCGAT
GCCGACATTC TGGCGCGGTT TGGCGGCGAG GAGTTTATCG CCCTGTTGCC GGAAACCAAT
CGGGCAGGGG CGCTGCGGGT CGCTGAGCGG CTACGCGCAG CAGTTGCAGG CGTTCCTCTC
TTGCGCGAGC CACCCGTTCA GGTGACAATC AGCATTGGTT GCGCAGTGCT GGATTCCGTC
AGCGAGCACG ACCGCCTGGA CACACTCATC CATCGCGCGG ATCGCGCCCT CTATATCGCC
AAATCCAGAG GACGCAATCA GGTTGCGTCC GATCCATAG
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| Protein sequence | MYFFIQDDWK IALLSTAVES MSEAVLMTDP AGKILLLNRQ FEELWRLTPG WMETITARDR
IQQLAHLLCD PDQFLNRLDE VYAHPDLEAL DWLTLRDGRI IERHTRGLHL EERIIGRIWV
FRNITSREWA QRELKVMKRV LEALNRIVEP QRQLQAGVQA LAQELEARAA WLWGVEGSDF
ARLLAHYGAR ELRIDLTPRA PGDPCECLQR LLDHGFPATA HPIVCPRLAH LNTPDQEPAR
HISVPIYSRD RPLAILNLVL PSIQPFNVAE LRMFAAIANQ FSVAIERARL FESVREEQRA
AEVLRQAAAT LSASLDFEQV LDHVLDQIVA LMPCDGASVM LVEGTQARVV RVYGYEALSD
EAERAIHTVT FEIARTPTLR RLLETRQPWI IGETHNNPAW VRIEYALPIR SWLGVPVIVR
QQVVAFICVD SFVPYAYRPE HARRLATLAS SVSLALHNAQ LYEQTNAALE RERRLSELTR
TISSALDIEV ILDTVVRLSV ELVGADAAVL GLLSADHAAL VRTHTFNMPE SLMQHVQGVQ
PVWSAVETRQ SVIRHHVMLK AGRVTHHIPS VIGTPIIAGG KALGVLAVYH LHRQRFFGEH
DRSMLEIVGQ QTGVAITNAH LFTETQRLAT TDHLTGLFNR HHFFALAPRE LERARRYHHP
LALLVIDVDY FKTINDTFGH SAGDVVLRSV AKQMQRELRD ADILARFGGE EFIALLPETN
RAGALRVAER LRAAVAGVPL LREPPVQVTI SIGCAVLDSV SEHDRLDTLI HRADRALYIA
KSRGRNQVAS DP
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