| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0981 |
|---|
| Symbol | |
|---|
| ID | 5538447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1285991 |
|---|
| End bp | 1287325 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640893128 |
|---|
| Product | hydroxymethylglutaryl-CoA reductase, degradative |
|---|
| Protein accession | YP_001431111 |
|---|
| Protein GI | 156740982 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1257] Hydroxymethylglutaryl-CoA reductase |
|---|
| TIGRFAM ID | [TIGR00532] hydroxymethylglutaryl-CoA reductase, degradative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAACGC GCAACTCACG GATCAGCGGG TTCTACCAAC TCAGCCCAAA CGAGCGTCTC
GAAGTCGTGC GGTCGTTCGA CGGGCTGAAC GACGAAGACC TGCGCCAGCT CCACGGCGGC
AATGGCGCCC TGACCGTCGA GCGCGCCGAC AAGATGATCG AGAATGTGAT CGGCACGTTC
AACCTGCCAC TCGGCATTGC AACCAACTTT CTGATCAATG GGCGCGATGT GCTCATTCCA
ATGGTCGTCG AAGAGCCATC GATCGTCGCA GGCGCCAGTT ATGCGGCAAA ACTGGTACGC
GACGGGGGCG GGTTCCAGGC AAGTTCCACC CCGCCGCTTA TGATCGGTCA GGTGCAACTG
GTGCACGTCG CCGATCCGCA CCGCGCCCGC CATGATATTC TGGCGCAGCG CGAGGCGATC
CTGGCGCTCG CCAACCGTCA GAGCAGCAGC CTGGTGGCGC TTGGCGGCGG CGCCAGAGAT
GTCGAGGTGC GCTTTTTCGA GACCAGCCCG ATGGGTCCGA TGCTGGTCGT GCATCTGATT
ATCGACTGCC GCGACGCGAT GGGCGCCAAT GCCATCAATA CGATGGCGGA AGCGGTCGCG
CCGCTGCTCG AAGAGATCAG CGGCGGCAAG GCGTACCTGC GCATTCTCTC GAACCTGAGC
GACCGGCGGC TGGCGCGGGC GCGGGCGATT GTGCCGGCGA AGTCGCTGGC GCGCGACGGT
CTGAGCGGCG AAGAGGTCGT TGAGGGCATT CTGTGGGCGT ATGCCTTTGC CGCAGTCGAC
CCTTATCGCG CAACGACACA CAACAAGGGT GTTCTGAACG GTATCGATCC GGTGCTGATC
GCCACCGGCA ACGACTGGCG CGCCGTCGAG GCTGGCGCGC ACGCCTATGC TGCGCGTAAC
GGACAATACA CCTCGCTGAC GCACTGGGAG CGCGACGCGC AGGGGAACCT GGTCGGCACG
CTCGAAATGC CGCTCGCGGT CGGTGTTGTC GGCGGCGCGA CGAAGGTGCA TCCGGCGGCG
CAGGCAGCGC TCAAATTGCT CGGCGTGACC CACGCGCACG AACTGGCGGA AATCTGCGTC
TGCGCCGGTC TGGCATCGAA CCTGGCGGCG ATGCGCGCTC TGGCAACAGA GGGCATTCAA
CGCGGGCATA TGAGCCTGCA CGCGCGCCAG ATTGCTATGG CCGCCGGCGC ACAGGGCGCC
GAGGTGGACA CCATTGCGGC GCGTATGGTT CAGGAGCGGC GCATTAAGCT GGCGCATGCC
GAAGCATTGC TGGCGGAACT GCGCGCGCAG AATGCCGGCA CTGCCGCCGC TCACGCTCTG
GCGACAACAA TGTAG
|
|---|
| Protein sequence | MGTRNSRISG FYQLSPNERL EVVRSFDGLN DEDLRQLHGG NGALTVERAD KMIENVIGTF
NLPLGIATNF LINGRDVLIP MVVEEPSIVA GASYAAKLVR DGGGFQASST PPLMIGQVQL
VHVADPHRAR HDILAQREAI LALANRQSSS LVALGGGARD VEVRFFETSP MGPMLVVHLI
IDCRDAMGAN AINTMAEAVA PLLEEISGGK AYLRILSNLS DRRLARARAI VPAKSLARDG
LSGEEVVEGI LWAYAFAAVD PYRATTHNKG VLNGIDPVLI ATGNDWRAVE AGAHAYAARN
GQYTSLTHWE RDAQGNLVGT LEMPLAVGVV GGATKVHPAA QAALKLLGVT HAHELAEICV
CAGLASNLAA MRALATEGIQ RGHMSLHARQ IAMAAGAQGA EVDTIAARMV QERRIKLAHA
EALLAELRAQ NAGTAAAHAL ATTM
|
|---|
| |