Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0958 |
Symbol | |
ID | 5538424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1264470 |
End bp | 1265696 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640893106 |
Product | hypothetical protein |
Protein accession | YP_001431089 |
Protein GI | 156740960 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00607753 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAGCAAC TCGGATTATT CGCTCACCTC ACCCACAAAG CCAATCTCAG GCACACGCGC TATGGATGGC TCAGGTTGAC CCCTGCATAT TCGGTTCACC TGGTTCAGGA TGTGCTCTCC CAAATAACAC CTCATGACAC GGTTGTTCTC GATCCTTTTT GCGGAACTGG AACAACAGCC CTTGCATGCG CCGAACGAGG TATTCCTGTC GATACGACTG ATATCAATCC TTTTCTGCTT TGGCTCACCA AAACCAAGGT TGGTGCGTAT GATTCGGCTC ATCTGACTGC ATTTCGATCA AATGCTCAAT ATGTTGCTCA ATTAATAGAA AACTCTGGTG GAAACGATAT ATGGACTCCT CCCATCCACC AGATCGAAAA ATGGTGGAGT GTTGATGTCC TTCGTATCCT GGGAGGAATG ATGGGTTTTA TTCGCCGAAT ATCGGATTTT TGCTCTGAGA AGGTTGTGGA CTTGCTCAAA GTTGCTTTCT GTAGGACAAT GATCGCTCAT TCGAGTGCGA GTTTTAACCA TCAATCGATG TCCTTCAAGA CACAGAACAA TCTACCGCTG TTTCATCGAG CGGCTGATGA TATGTTGATG ACCTGGCAGG CGGTAGTAGA AGACCTGTAC ATTTCTGCTC AGAGTAAGGT GCAGACAAAG CCAGGAATTT TTTTGTGCGA TGCGCGGAAA TTATCAACTG TCCTTCCCCA TGATTTTTAT ACATGTGTCA TCACCTCTCC GCCATATCCG AACAGAATGA GTTATATTCG TGAGTTGCGT CCGTATATGT ACTGGTTGGG CTACCTGTGT GATGGACGCG AAGCGGGTGA ACTGGACTGG CAAGCAATTG GTGGAACCTG GGGCGTTGCG ACGAGCAACG TCGGCAGGTG GTCGCCGCCG GAAACGCGCG CTATTCCGTA TCCTGAATTT TCGGGCATTC TTGCAAAAAT ATCGGTAAAA AGCGATCTGC TCGCCCGATA CGTGCATAAA TACTTTTATG ATATGGCAGA TCACATTAAT GACCTGTTCT TGGTGGTCAA GTCTGGTGGA TCGATTTACT ACATTGTCGG AAATTCAAAG TTTTACGATG TCATTGTGCC GGTTGAAGCG ATTTTTGCCA GTATGTTCAG TGAACGTGGT TTCGTCGATG TAGACGTTCG TCCAATTCGG AAGAGAACAT CGAAGAAGGA TCTGTATGAA TATCTTATAT GCGCGCGAAA ACCTTAA
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Protein sequence | MQQLGLFAHL THKANLRHTR YGWLRLTPAY SVHLVQDVLS QITPHDTVVL DPFCGTGTTA LACAERGIPV DTTDINPFLL WLTKTKVGAY DSAHLTAFRS NAQYVAQLIE NSGGNDIWTP PIHQIEKWWS VDVLRILGGM MGFIRRISDF CSEKVVDLLK VAFCRTMIAH SSASFNHQSM SFKTQNNLPL FHRAADDMLM TWQAVVEDLY ISAQSKVQTK PGIFLCDARK LSTVLPHDFY TCVITSPPYP NRMSYIRELR PYMYWLGYLC DGREAGELDW QAIGGTWGVA TSNVGRWSPP ETRAIPYPEF SGILAKISVK SDLLARYVHK YFYDMADHIN DLFLVVKSGG SIYYIVGNSK FYDVIVPVEA IFASMFSERG FVDVDVRPIR KRTSKKDLYE YLICARKP
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