| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0953 |
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| Symbol | |
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| ID | 5538419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1260493 |
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| End bp | 1261623 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640893102 |
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| Product | sodium ion-translocating decarboxylase, beta subunit |
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| Protein accession | YP_001431085 |
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| Protein GI | 156740956 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit |
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| TIGRFAM ID | [TIGR01109] sodium ion-translocating decarboxylase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.126318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTCT CGACACTCAT CCCGGAATTG ATCCAAGGTC TGGCGAACTT GACGCCTGGC
AACCTGGTGA TGATCGCGGT TGCGGCGACG TTGATTGCGC TGGCGGTGGT GAAGCAGTAT
GAGCCGGTGC TGTTGCTGCC GATTGGGTTT GGTTGTCTGG TGGCGAACAT TCCGCTCACC
GGCATGACCG ACGGCGAAGG GTTGTTTGGC ATTCTCTACC GCGCCGGGAT TAGCACCGAA
CTCTTCCCAC TCCTCATTTT CATCGGCGTT GGCGCGATGA TCGATTTCGG CCCGTTGCTG
GCAATGCCAC GTATGGCGCT TCTTGGCGCT GCCGGTCAAT TTGGCATTTT TGGCACGCTG
ATCCTGGCGA CGCTTCTCGG TTTTCCGCTC AATCAGGCGG CATCGATTGG CGTCATCGGT
GCGATTGACG GTCCCACGTC GATCTATGTT GCCTCGCAAC TGGCGCCGGA ACTGCTTGCC
CCAATCGCCG TCGCAGCCTA CTCGTATATG AGCCTGGTGC CGATCATCCA ACCGCCGCTG
ATGCGGCTGC TGACATCACG CCGCGAGCGA CGCATCCGCA TGGCATACGC GCCGCGGCCG
GTCTCGCGGC AGGCGCTGAT CCTCTTTCCG CTTGTCGTCA CACTGATCAT AGGGCTGCTG
GTTCCGGCGG CGACGCCGCT GATCAGTATG CTCATGCTGG GGAACCTGCT GCGCGAAAGC
GGCGTGGTCG AGCGATTGAG CAACGCGGCG CAGAATGAAG TGATCAATGT CGCTACCCTG
TTCCTGGGAT TGACCATCGG CTCGACGATG GGCGCCGAGT CGTTTCTGAG CCTGGTGACG
CTCCAGGTGC TGGGGTTGGG GCTGCTGGCG TTCGTGCTCG ATACCGTCGC CGGTCTGCTG
TTCGGCAAGG TTCTGGCGCT GGTCAGCGGC GGGACGGTCA ATCCGTTAAT CGGGGCGGCC
GGCATTTCCG CCTTCCCGAT GGCAGGGCGG TTGGCGGCAA AAGTGGCGCT CGCCGAAGAC
CCCGACAATT TCATCCTGAT GCATGCCATG GGCGCCAACA CCGCCGGGCA ATTGGGCAGC
GTCGTCGCCG GCGGCGCGCT GCTGGCGCTG GTGAGCGGGA TTCTGGGGTA A
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| Protein sequence | MDFSTLIPEL IQGLANLTPG NLVMIAVAAT LIALAVVKQY EPVLLLPIGF GCLVANIPLT
GMTDGEGLFG ILYRAGISTE LFPLLIFIGV GAMIDFGPLL AMPRMALLGA AGQFGIFGTL
ILATLLGFPL NQAASIGVIG AIDGPTSIYV ASQLAPELLA PIAVAAYSYM SLVPIIQPPL
MRLLTSRRER RIRMAYAPRP VSRQALILFP LVVTLIIGLL VPAATPLISM LMLGNLLRES
GVVERLSNAA QNEVINVATL FLGLTIGSTM GAESFLSLVT LQVLGLGLLA FVLDTVAGLL
FGKVLALVSG GTVNPLIGAA GISAFPMAGR LAAKVALAED PDNFILMHAM GANTAGQLGS
VVAGGALLAL VSGILG
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