| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0934 |
|---|
| Symbol | |
|---|
| ID | 5538400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1239605 |
|---|
| End bp | 1240771 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640893083 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001431066 |
|---|
| Protein GI | 156740937 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000731277 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.167396 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCAG TACCCGACAA TGCCGTCCAG GAAACAGAAG ATTTCGATTG GACGCAGATG
CTCGACGACT ACGACTATGC GCGTCCGCAA CGCGGCGAGG TGCGCGAGGG CGTGGTCATG
AAGATTGAAG ACGGCGGTAT TCTGGTCTCG ATTGGCACCA AGCGCGAAGG GATCATTCCG
ATTGCCGACG TGCGCGCTAT CGGCGATGAG GTGTTGAACA ACCTGAAGGT GGGCGATCGG
ATTCAGGTGT ACGTTCAGGA CCCGGAGAAT CGCCAGGGCG ATCTGGTCTT GTCGCTGACG
ATGGTACAAG TTGCGCGCGA TTGGGAAGAA GCGGCTCGCC TGAGCGCTGA GGGCGGCATT
GTGCAGGGCC AGGTTATTGG CTACAACAAA GGTGGCTTGC TGGTACAGTT CAATCGCATT
CGTGGGTTTG TGCCGGCATC TCAGGTGGCG CAACTCCATG GACGCACTGC TGCCGAGGAA
CGGCAGCAGG CGTTGCAACG CATGGTTGGT CAGACCATCC CGCTGAAGGT GATCGAGGTG
GATCGTGATC GCAATCGGTT GGTGCTATCG GAGCGCAGCG CAACGCAGGA GTGGCGCAAG
GCGCAGAAGC AGCGTCTGCT TACGGAACTT CAGCCGGGCG ATATTTTGAC CGGGCGCGTC
AATCAACTGA CGAACTTCGG CGCATTCATC GATCTCGGCG GCGCCGATGG TCTGGCGCAT
ATCTCCGAAT TGTCGTGGCA GCGCGTCAAC CATCCCCGCG AGGTGCTGTC GCCAGGGCAG
GAAGTGAGGG TCATGGTCGT GGAGATCGAT GCCGAACGTG AACGCATTGG TCTCAGCCTG
CGCCGCCTTC AACCCAATCC ATGGGATACA ATCGATCAGC GCTACTCGCT TGGACAACTC
GTGAGCGGTC CGGTGACGAA CGTTGCACCG TTTGGCGCAT TTGTGCAGAT AGAAGAGGCG
GTCGAAGGTC TGATCCACGC CAGCGAACTC GACGCCGATC CGCAGGCGCA GCCGCGCGAT
CTGTTGCAGC CCGGTCAGAT CATCACGGCC CGAATTATCA GCCTCGATAA GCAGCGCCAG
CGTATGGGGC TTAGCCTGCG CCGCAACAGC GCCGATGAAC CGCCGCCGGA GGAGACGCCG
GTTGAGGCGC CGTCCACCGA TATGTAA
|
|---|
| Protein sequence | MKAVPDNAVQ ETEDFDWTQM LDDYDYARPQ RGEVREGVVM KIEDGGILVS IGTKREGIIP
IADVRAIGDE VLNNLKVGDR IQVYVQDPEN RQGDLVLSLT MVQVARDWEE AARLSAEGGI
VQGQVIGYNK GGLLVQFNRI RGFVPASQVA QLHGRTAAEE RQQALQRMVG QTIPLKVIEV
DRDRNRLVLS ERSATQEWRK AQKQRLLTEL QPGDILTGRV NQLTNFGAFI DLGGADGLAH
ISELSWQRVN HPREVLSPGQ EVRVMVVEID AERERIGLSL RRLQPNPWDT IDQRYSLGQL
VSGPVTNVAP FGAFVQIEEA VEGLIHASEL DADPQAQPRD LLQPGQIITA RIISLDKQRQ
RMGLSLRRNS ADEPPPEETP VEAPSTDM
|
|---|
| |