| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0917 |
|---|
| Symbol | |
|---|
| ID | 5538383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1201165 |
|---|
| End bp | 1202169 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640893067 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001431050 |
|---|
| Protein GI | 156740921 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1089] GDP-D-mannose dehydratase |
|---|
| TIGRFAM ID | [TIGR01472] GDP-mannose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAGT ATCATGGTCA GGCATACGGA GGAGAGTTCG TGCGCGTGTT CATTACCGGC
ATCACCGGTC CGGTCGGCAG CGCCCTTGCA GACTATCTGG TGGCGCTTCC CGGCGTCGAG
GTGCATGCCT TCAAGCGCTG GCGCAGCGAT ACGCGCCCGA TTGCGCATCT CGCAGGGCGG
ATCACACTGC ACGAAGGGGA CATCGAAGAC CCCTATTCGG TGATGCGCGC TGTGGAGCGG
GCGGCGCCCG ATCGTGTCTA CCACCTGGCA GCGCAGAGTT ACCCCAGCGA GTCGTGGGAT
GCGCCGATTG TCACGATGCG CACCAATGTC GAGGGAACGA TCAATGTGCT GGAGGCGGTG
CGGCGTCATG CGCCACGTGC GCGCGTCCAC CTTGCGGGCA CAAGCGCCGA GTATGGCTGG
GTGCAGCCGG AGGACACGCC GATCCCCGAG ACGCACCCCA CGCGCCCGCT CAGCCCGTAT
GGCGTGAGCA AGGTCGCTGC CGGGTTGAGC GGACTCCAGT ACGCCGCGAA CTACGGCATG
CACGTGGTGG TCACCCGCTC GTTCAACCAC GTGGGACCGC ACCAGGGGGA CCGGTGCGCA
ATTCAGACAT TCTGCCGCCA GATGGCGCTG ATCGAATATG ATCGTCAGGA GCCGGTCATC
TACGTTGGCA ATCTGGAAGC GCGGCGCGAT TTCACCCACA CCCGCGATGT GGCGCGCGCC
CTCTGGCTGC TCCTCGACCA CGGCGCTCCC GGCGAAATCT ACAACCTCTG CTCCGGCGTG
GCGACTCGTA TCGGCGATAT TGTCGCCATG GTGCAGCAGC ACGGGCGCGT TCCAACGGAG
GTGCGCGTCG ATCCGGCGCG CCTCCGTCCG TCGGACGAAC CGCTGCTCGT GGGTGATAAT
ACGAAATTGC GCCAGACGAC CGGGTGGCAG CCGCAGATCA CGGTGCCGAT GATCGTCGAG
GAATTGATGG CGTACTGGCG GGAGCGACTG GCGTCGGGCG GGTGA
|
|---|
| Protein sequence | MVQYHGQAYG GEFVRVFITG ITGPVGSALA DYLVALPGVE VHAFKRWRSD TRPIAHLAGR
ITLHEGDIED PYSVMRAVER AAPDRVYHLA AQSYPSESWD APIVTMRTNV EGTINVLEAV
RRHAPRARVH LAGTSAEYGW VQPEDTPIPE THPTRPLSPY GVSKVAAGLS GLQYAANYGM
HVVVTRSFNH VGPHQGDRCA IQTFCRQMAL IEYDRQEPVI YVGNLEARRD FTHTRDVARA
LWLLLDHGAP GEIYNLCSGV ATRIGDIVAM VQQHGRVPTE VRVDPARLRP SDEPLLVGDN
TKLRQTTGWQ PQITVPMIVE ELMAYWRERL ASGG
|
|---|
| |