Gene Rcas_0910 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0910 
Symbol 
ID5538376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1193604 
End bp1194821 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content59% 
IMG OID640893060 
ProductL-carnitine dehydratase/bile acid-inducible protein F 
Protein accessionYP_001431043 
Protein GI156740914 
COG category[C] Energy production and conversion 
COG ID[COG1804] Predicted acyl-CoA transferases/carnitine dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.397198 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGGAA ACGCAAGCCC CCTGCCGCTG GCGGGCATTC GCGTCATTGA TGCTGCAACT 
GTTGTTGCGG CGCCGTTCTG CGCCACCCTG CTTGGCGAAT TCGGCGCGGA TGTGTTGAAG
GTCGAGCATC CCGTTGGGGG TGATGCGCTG CGGCGTTTTG GCACGCCGAC CGCGCGCGGC
GATACGCTGA CCTGGCTCAG TGAGTCGCGT AACAAGCGTT CGGTGACGCT CAACCTGCAA
CATCCCGAAG GTGCGCAGCT TTTTAAGGAC CTGGTGGCAA AAGCCGATGT GCTATGCGAG
AACTTTCGTC CCGGCACGCT GGAAAAGTGG GGGCTAGGGT GGGATGTTCT CAGTCAGATC
AATCCGGGAC TAATCATGTT GCGGGTAACC GGCTATGGGC AAACAGGACC GTACAAGGAT
CGTCCGGGAT TTGCTCGAAT TGCCCACGCG GTCGGCGGTA TTTCGTACCT CGCCGGCATG
CCGAAAGGAA CGCCGGTCAC TCCGGGATCG ACGACGCTTG GCGATTACAT GACCGGGCTG
TACGGGTGCA TCGGTGTGCT GCTGGCGCTG CATTACCGCG AGAAAACCGG TCGCGGACAG
TATATCGATG CCGCTCTGTA TGAATCGGTC TTTCGTTGTA GCGATGAGTT GGTGCCTGCC
TACGGCATGT ACAAAAAAGT GCGCGAACGG CATGGACCGC ACCACAACGA CTTTGCCTGT
CCCCATGGTC ACTTCCAGAC GAAGGACGGC AAATGGGTTG CTATTTCCTG TGCAACCGAC
AAATTGTTCG CGCGACTGGC GAAGGCGATG GGTCGCCCTG AGCTGGCGTC GTCGAGCATC
TATGGTGAGC AGAAGATCCG TCTTGAGCAT GCAAACGATG TGAACGAGAT CGTGCGCGAC
TGGTGTAGTT CGCTTACTCG CGCCGAGGTG CTGGAACGCT GCAATGCGAC CGCCACTCCT
GCTGCGCCGC TCAACGACAT CGCCGATATC TTCGGCAATC GCCAGGTCCA TGCGCGGCGC
AATCTCATCG CGGTAGACGT GGAGGATTTG GGCGAAACGA TCATCGTGCC CAACATTGTG
CCCAAACTGT CGGAAACACC GGGGCGGATC AGGAGTCTCG GTCCCAGGCT CGGCGAGCAT
ACCGACGAGG TGCTCAAGGA GGTGCTCGGG ATGAGTGATG ATCAGATCGG CGAATTGCGC
GCCAAACGGG TGATTTGA
 
Protein sequence
MDGNASPLPL AGIRVIDAAT VVAAPFCATL LGEFGADVLK VEHPVGGDAL RRFGTPTARG 
DTLTWLSESR NKRSVTLNLQ HPEGAQLFKD LVAKADVLCE NFRPGTLEKW GLGWDVLSQI
NPGLIMLRVT GYGQTGPYKD RPGFARIAHA VGGISYLAGM PKGTPVTPGS TTLGDYMTGL
YGCIGVLLAL HYREKTGRGQ YIDAALYESV FRCSDELVPA YGMYKKVRER HGPHHNDFAC
PHGHFQTKDG KWVAISCATD KLFARLAKAM GRPELASSSI YGEQKIRLEH ANDVNEIVRD
WCSSLTRAEV LERCNATATP AAPLNDIADI FGNRQVHARR NLIAVDVEDL GETIIVPNIV
PKLSETPGRI RSLGPRLGEH TDEVLKEVLG MSDDQIGELR AKRVI