Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0910 |
Symbol | |
ID | 5538376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1193604 |
End bp | 1194821 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640893060 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_001431043 |
Protein GI | 156740914 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.397198 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGGAA ACGCAAGCCC CCTGCCGCTG GCGGGCATTC GCGTCATTGA TGCTGCAACT GTTGTTGCGG CGCCGTTCTG CGCCACCCTG CTTGGCGAAT TCGGCGCGGA TGTGTTGAAG GTCGAGCATC CCGTTGGGGG TGATGCGCTG CGGCGTTTTG GCACGCCGAC CGCGCGCGGC GATACGCTGA CCTGGCTCAG TGAGTCGCGT AACAAGCGTT CGGTGACGCT CAACCTGCAA CATCCCGAAG GTGCGCAGCT TTTTAAGGAC CTGGTGGCAA AAGCCGATGT GCTATGCGAG AACTTTCGTC CCGGCACGCT GGAAAAGTGG GGGCTAGGGT GGGATGTTCT CAGTCAGATC AATCCGGGAC TAATCATGTT GCGGGTAACC GGCTATGGGC AAACAGGACC GTACAAGGAT CGTCCGGGAT TTGCTCGAAT TGCCCACGCG GTCGGCGGTA TTTCGTACCT CGCCGGCATG CCGAAAGGAA CGCCGGTCAC TCCGGGATCG ACGACGCTTG GCGATTACAT GACCGGGCTG TACGGGTGCA TCGGTGTGCT GCTGGCGCTG CATTACCGCG AGAAAACCGG TCGCGGACAG TATATCGATG CCGCTCTGTA TGAATCGGTC TTTCGTTGTA GCGATGAGTT GGTGCCTGCC TACGGCATGT ACAAAAAAGT GCGCGAACGG CATGGACCGC ACCACAACGA CTTTGCCTGT CCCCATGGTC ACTTCCAGAC GAAGGACGGC AAATGGGTTG CTATTTCCTG TGCAACCGAC AAATTGTTCG CGCGACTGGC GAAGGCGATG GGTCGCCCTG AGCTGGCGTC GTCGAGCATC TATGGTGAGC AGAAGATCCG TCTTGAGCAT GCAAACGATG TGAACGAGAT CGTGCGCGAC TGGTGTAGTT CGCTTACTCG CGCCGAGGTG CTGGAACGCT GCAATGCGAC CGCCACTCCT GCTGCGCCGC TCAACGACAT CGCCGATATC TTCGGCAATC GCCAGGTCCA TGCGCGGCGC AATCTCATCG CGGTAGACGT GGAGGATTTG GGCGAAACGA TCATCGTGCC CAACATTGTG CCCAAACTGT CGGAAACACC GGGGCGGATC AGGAGTCTCG GTCCCAGGCT CGGCGAGCAT ACCGACGAGG TGCTCAAGGA GGTGCTCGGG ATGAGTGATG ATCAGATCGG CGAATTGCGC GCCAAACGGG TGATTTGA
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Protein sequence | MDGNASPLPL AGIRVIDAAT VVAAPFCATL LGEFGADVLK VEHPVGGDAL RRFGTPTARG DTLTWLSESR NKRSVTLNLQ HPEGAQLFKD LVAKADVLCE NFRPGTLEKW GLGWDVLSQI NPGLIMLRVT GYGQTGPYKD RPGFARIAHA VGGISYLAGM PKGTPVTPGS TTLGDYMTGL YGCIGVLLAL HYREKTGRGQ YIDAALYESV FRCSDELVPA YGMYKKVRER HGPHHNDFAC PHGHFQTKDG KWVAISCATD KLFARLAKAM GRPELASSSI YGEQKIRLEH ANDVNEIVRD WCSSLTRAEV LERCNATATP AAPLNDIADI FGNRQVHARR NLIAVDVEDL GETIIVPNIV PKLSETPGRI RSLGPRLGEH TDEVLKEVLG MSDDQIGELR AKRVI
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