| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0903 |
|---|
| Symbol | |
|---|
| ID | 5538369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1182862 |
|---|
| End bp | 1183869 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640893053 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001431036 |
|---|
| Protein GI | 156740907 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGATG CCATTCTGCG CGCAGAAGCG CTCCGGGCGT TTTATGCGCT CGATATCTAT
GGTAAAACCA AAATCATCAA GGCGGTCCAC GATGTTGATC TGGCGATCCG GGAGAATGAG
ATCTACGGCA TCGCCGGCGA GAGCGGCTGC GGTAAATCCA CGTTGCTCAA GGCGCTTGCG
GCTGCCGTCG AGCCGCCATT GCGCATCATG GGCGGAAAGG TTTGCTATCG CGTCAATGGC
GCCGAGATCG ATGTCGCGGC GCTTTCTCAG GAAGAGAAAC GCAGGCTGCG CATGACGTAT
ATCGCGTATG TGCCACAGGG GTCGATGAGC GTGCTCAACC CGGTCGCGCG CATTCGCGAT
ACGTACCGCG ACTTCATTGA AAGTCATCTG GACGTTCACC AGAAGAGCGA CGCCTTCATC
CTCGCCAGAG ACCATCTGAT CGAGTTGGGA TTGCCGCCGA AAATCCTCGA TGCCTACCCG
CATCAACTGT CGGGCGGTAT GCGGCAGCGT GTGACGATTG CGCTTGCGAC GTTGCTCAAG
CCGCGTATCA TTATCGGCGA TGAACCAACC ACGGCGCTCG ATGTTGTCGT GCAGCGCGGG
GTCGTGCAAT TGCTCAGGGA TGTGCAGTCC AGGCTGAAAA ATACCATTGT GCTGGTAACG
CACGATATGG GGGTGCATGC CAATATTGCC GACCGCATCG GCATCATGTA TGCCGGGAGG
ATCGTCGAGG AAGCGCCAAC CGAACGCATG TTCAGCGTGC CGACCCATCC ATACACACAG
TATCTGATCA GTTCATTGCC CAGGTTTGGC GACAAAACGC CGCGTGAGAG CGTACCGGGA
AGTCCGCCTT CACTCGCCAA TCCGCCCTCC GGCTGTCCGT TCCATCCCCG CTGTCCTCAC
GCGATGGAGA TCTGCAAGCG CGAGATGCCG GGATTCACAC CGGTTGCGCC GGATCACAGG
GTTGCCTGTT GGTTGGTCGA AGAGGGGAGT TATGGAAAAG CTGCTTGA
|
|---|
| Protein sequence | MGDAILRAEA LRAFYALDIY GKTKIIKAVH DVDLAIRENE IYGIAGESGC GKSTLLKALA
AAVEPPLRIM GGKVCYRVNG AEIDVAALSQ EEKRRLRMTY IAYVPQGSMS VLNPVARIRD
TYRDFIESHL DVHQKSDAFI LARDHLIELG LPPKILDAYP HQLSGGMRQR VTIALATLLK
PRIIIGDEPT TALDVVVQRG VVQLLRDVQS RLKNTIVLVT HDMGVHANIA DRIGIMYAGR
IVEEAPTERM FSVPTHPYTQ YLISSLPRFG DKTPRESVPG SPPSLANPPS GCPFHPRCPH
AMEICKREMP GFTPVAPDHR VACWLVEEGS YGKAA
|
|---|
| |