| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0897 |
|---|
| Symbol | |
|---|
| ID | 5538363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1173744 |
|---|
| End bp | 1175912 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640893047 |
|---|
| Product | alpha-glucan phosphorylase |
|---|
| Protein accession | YP_001431030 |
|---|
| Protein GI | 156740901 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02094] alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.853827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATG GGGTCAAGGA GGCGTCCTTG AGTATCAGAA GCGCCGATTT ACTCTTTACA
CCGATTCCTG AGCGGATCGC CCGTCTCCGC GATCTGGCGT ACAACCTGTG GTGGAGTTGG
CATCCCGAAG CGCAGGATCT CTATCGCCAC ATCGACGCTG ACCTGTGGGA GGAGGATCAT
CACAATCCGG TCGATTTCCT GCGCGATGTG CGCCAGCGCA AACTCGAAGC CGCCGCCGCC
GATCCGGCGT ATCTGGCGAA GTACGACCAG GTGATGGCGG CGTTCGACCG GTACATGGCG
GCTGAGGACA CCTGGTACCG CCGCACCTTC GGCAATGGCA ACGGCAACGA TGTGATGATC
GCCTATTTCT CGGCGGAGTT TGGTCTTCAC GAGTCATTGC CGATCTATTC AGGCGGTCTT
GGCGTTCTGG CAGGCGATCA CGTAAAAGAG GCGAGTGATC TGGGGTTGCC GTTCGTTGCC
GTTGGATTTA TCTACCCACA AGGATACTTC CGGCAGCGGT TGGATCCGAG CGGTTGGCAG
GAGGCGATCT ATTCTAAATT GAATTTCGCC GATATTGCGG CAACGCAGGC GCTGACTGCC
GACGGGCGCG AGGTGGTCGT CGAGGTCGAT CTGCCCGGTC GCGCGATCTA TGCCAAGGTG
TACCGCATCC AGGTTGGGCG GGTGTCGCTG TTCCTGATGG ACACGGACAT TCATCCGAAC
AGTCCGCAAG ACCGCGAACT GTCGGCGCGT CTGTACGGCG GCGACCAGGA AATGCGCATT
GCGCAGGAAA TTGTTCTGGG CATTGGCGGG GTACGCGCAC TGCGTCAACT TGGTATTCAC
CCGAACGTCT GGCACATGAA TGAAGGGCAC TCGGCGTTCC TGGTGCTCGA ACTGGTGCGC
GAGCAGGTCG CGCAGGGCAT GCCGTTCGAT GAGGCATGGC GCGAAGTGCG CGCACAGTCG
GTCTTCACCA CGCACACACC GGTGCCGGCG GGCAATGATG CCTTCCCGCT CCACCTCATA
GAGAAGTACT TTGGGTCGTT CTGGACCCAA CTCGGACTGA CGCGCGAGCA ATTCTTCGCT
ATTGCGCTGC AACATCAGCA GTGGGGACCA ACGTTCGCCA TGACCGTGCT GGCGCTGAAG
GGATCGCATG TGCACAATGG CGTAAGTAAA CTGCACGGTC ATGTGGCGCG CGGCATGTGG
CACTGGCTCT ATCCAGGCAC AGCGCAGGAT GAGGTGCCGA TCACCTCGAT CACGAACGGC
ATCCACAGCA GCACGTGGCT GGCGCCTGCG ATGCGCCGCC TGTACGATGC GGCGCTTGGC
CCCGATTGGG AAGCGGACCT CGACAATGTC GCCCGCTGGG AGAAGGTGCG AGACATTCCC
GACGATCAGT TATGGGAGAC GCGACAGGCG TTGAAACGCG ATCTTGTCAT GCTGGCGCGT
GAACGTGTTC GCCAGCGTCA TCTGCGGTTG GGATCACCAC CGCAGGTCTG GCCCGTGCTC
GACGAGAAGA TTCTCACGAT TGGCTTTGCC CGCCGGTTTG CCACCTACAA GCGCGCCACG
CTGCTGTTTC GCGAGCCGGA GCGTCTCAAG GCGTTGCTCA ATCGCAGCGA CCGGCCCGTG
CAGATTATTT TTGCGGGCAA AGCGCATCCG GCAGACGATC CGGGGAAACA GTTCATCCAG
CAGGTTTATC AGATGTCGCA GCAACCTGGA TTTCTTGGGC GCATTCTGTT CGTTGAGGAA
TATGATATGG CCCTGGCGCG TGCGCTGGTT CAGGGGGTGG ATGTCTGGCT CAACACGCCG
CGGCGCCCAT ATGAGGCAAG CGGCACCAGC GGGCAGAAGG CGGGGCTGAA TGGCGTCGTC
AATGTCAGCA TCCTCGACGG TTGGTGGCCC GAGGCGTACA ACGGCAAGAA CGGCTGGGCA
ATCGGCGAAG AGCGTGAGTA CAGCAATCAG GACGAGCAGG ACTGGCACGA CTCGCAGCAT
CTCTACCGTA TTTTGGAGCA GGAAGTCATT CCGACGTATT ACGACCGGGG ACCTGACGGT
ATCCCGCACC GGTGGCTGGC AATTGCAAAA GAATCGATTG CCACCATTGC GCCGGTATTC
AGCACCCGCC GCATGGTCAA GGAGTACGTC ACGCGGTTGT ACCTGCCGGT GGCAGAAATA
CAGGCGTAG
|
|---|
| Protein sequence | MADGVKEASL SIRSADLLFT PIPERIARLR DLAYNLWWSW HPEAQDLYRH IDADLWEEDH
HNPVDFLRDV RQRKLEAAAA DPAYLAKYDQ VMAAFDRYMA AEDTWYRRTF GNGNGNDVMI
AYFSAEFGLH ESLPIYSGGL GVLAGDHVKE ASDLGLPFVA VGFIYPQGYF RQRLDPSGWQ
EAIYSKLNFA DIAATQALTA DGREVVVEVD LPGRAIYAKV YRIQVGRVSL FLMDTDIHPN
SPQDRELSAR LYGGDQEMRI AQEIVLGIGG VRALRQLGIH PNVWHMNEGH SAFLVLELVR
EQVAQGMPFD EAWREVRAQS VFTTHTPVPA GNDAFPLHLI EKYFGSFWTQ LGLTREQFFA
IALQHQQWGP TFAMTVLALK GSHVHNGVSK LHGHVARGMW HWLYPGTAQD EVPITSITNG
IHSSTWLAPA MRRLYDAALG PDWEADLDNV ARWEKVRDIP DDQLWETRQA LKRDLVMLAR
ERVRQRHLRL GSPPQVWPVL DEKILTIGFA RRFATYKRAT LLFREPERLK ALLNRSDRPV
QIIFAGKAHP ADDPGKQFIQ QVYQMSQQPG FLGRILFVEE YDMALARALV QGVDVWLNTP
RRPYEASGTS GQKAGLNGVV NVSILDGWWP EAYNGKNGWA IGEEREYSNQ DEQDWHDSQH
LYRILEQEVI PTYYDRGPDG IPHRWLAIAK ESIATIAPVF STRRMVKEYV TRLYLPVAEI
QA
|
|---|
| |