| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0877 |
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| Symbol | |
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| ID | 5538343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1145341 |
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| End bp | 1147497 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640893028 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001431011 |
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| Protein GI | 156740882 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00627604 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000262982 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTTCCA ACGATCCTGT GCGTCGCGCT GAGACGCTGC GCGAACAGAT CCGCTATCAT
AATTACCGCT ACTATGTTCT CGACGAGCCG GTGATTAGCG ACGCCGAGTA CGATGCGCTC
ATGCGCGAGT TGCGCGAGCT GGAAGCGGCG CATCCCGAAC TCGTTACCCC CGACTCGCCG
ACGCAGCGGG TTGGCGCGCC GCCTTCTGAA CAGTTCGCCA AAGTTCAGCA CGTCGTGCCG
ATGCTGTCGC TCGCTAACGC TTTCGATGAG GCGGGCATGC GCGCCTGGTA CGACCGCACC
CTGCGCTTGC TCGGCAGCGA TGCGCAGGTG GCGTTCGTCG TCGAGCCGAA GATTGATGGT
CTGGCAGTGA CCCTCATCTA CCGCAACGGC GTTCTGGTGC GCGGTGCGAC GCGCGGCGAT
GGTGAGATCG GCGAGGACGT GACGGCGAAC CTGCGCACTA TTTCCAGCAT TCCGCTCCGC
CTTGGTTCGT TCGCCAACGA CGATAGCGCG CCAACCAACC CGACTGCCGT TCCGCCGTTG
CTCGAAGTGC GCGGTGAGGT TTATATGCGC ATTGCCGATT TCATGCGCCT GAACGAACAA
CTGGCTGTGG CTGGCGAGAA GGTCGCCGCG AACCCGCGCA ACGCCGCCGC CGGTTCATTG
CGCCAGAAAG ACCCTGCGGT CACTTCCCGC CGTCCGTTGC GCTTTTTCGC CTATGGCGTC
GGGCAGGTCG AAGGGGTGGC GTTGCAGACA CAGTGGGAGA CGCTGCACTT TCTCCGCGCG
CTCGGTTTTC CGGTCAACCG TGATGCGCGG CGCTTCGAAC GCTTCGAGGA GGCGCTGGCG
TACTGCCGCG AGTGGATGAC TCGCCGCGAT GAACTGGAGT ACGAGGTTGA CGGCGTGGTG
GTCAAGATCG ATAGTTTTGC GCAACAGGCG GAACTCGGCG TTGTCGGGCG CGACCCGCGT
TGGGCGATTG CCTTTAAGTT CCCCGCGCGC GAGGCCGTCT CGCGGCTACT CGATATTGTG
GTGAATGTCG GGCGCACCGG CGTGATTACG CCCAACGCTG TGATCGAGCC GGTCAATATT
GGTGGCGTTA CGGTGCGTAA CGCCAGTCTG CACAACGCTG ATTATATCGC CGAACGCGAC
ATTCGCATCG GGGACTATGT GATCGTTAAG CGTGCCGGGG ATGTCATTCC GCACATTGTT
GGTCCAGTCG TGGCGCGGCG CGATGGCAGC GAGCGCGTCT GGCAGATGCC GGCCACCTGC
CCGGCATGCG GCACACCGCT GGAACGCGCC GAGGGCGAAG TCGCGTACCG CTGCCCGAAC
TTTGGCATCT GCCCGGCGCA AATTACCCGG CGGATCGAAC ACTTTGTGTC GCGCAGCGCG
ATGGACATCG CGGGAATCGG CGAGAAACAG GTGCAACTGT TCGTCGAACG CGGGTGGGTG
CAGGATGTTG CCGATCTGTA CACGCTGACG CCGGAGCATT TTCATGGGAT CGAGGGGTAT
GGTCCTAAGC GGATCGCCAA CCTGCTGAAC GCTATTGCCG AGTCGAAGGA TCGCCCGCTC
CACCGGCTGA TTGTCGGGCT TGGCATTCGC TATGTCGGTG AGGTCGTCGC GCAAATCCTC
GCCGATCATT TCGGTTCGCT CGATGCGCTG GCAGCCGCCT CTGCCGATGA GATCGACGAT
CTCGAAGGCA TTGGACCCGC GATTGCCGCC AGTGTCGCCG AGTATTTCGC ACGTCCGGAG
AGCAAGGCGC TGATCGCCAA ATTGAAGCGC GTCGGCGTGC GCACCGAGGC GAAAGGTCCT
GCCGTTGCGC CAAAGGGTGA TGCGCTAGCA GGTAAGACGT TCGTCATCAC CGGAACGCTT
CCGTCGATGT CGCGCGAAGA AGCCGGCGCC CTGATTGTGG CGCATGGCGG CAGGGTGAGC
GGCAGTGTCT CCAAAAAGAC TGATTATCTG GTGGTTGGGA GTGAACCGGG AGGAACAAAG
GTTGCGAAAG CGCAGGAATT GGGCATACCG ACGCTCGATG AGGCTGGTTT GCTGGCGTTG
ATCGGCGCAA ACGACCGCAG CGCTCCTGCA GCTTCCAATA ATAACCAGAA CGCAGCGTCT
GCGACATCCC GTGGTACAAT GGCAGAGGTT CAACAGCTGG GGTTGAATCT CGAGTAA
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| Protein sequence | MTSNDPVRRA ETLREQIRYH NYRYYVLDEP VISDAEYDAL MRELRELEAA HPELVTPDSP
TQRVGAPPSE QFAKVQHVVP MLSLANAFDE AGMRAWYDRT LRLLGSDAQV AFVVEPKIDG
LAVTLIYRNG VLVRGATRGD GEIGEDVTAN LRTISSIPLR LGSFANDDSA PTNPTAVPPL
LEVRGEVYMR IADFMRLNEQ LAVAGEKVAA NPRNAAAGSL RQKDPAVTSR RPLRFFAYGV
GQVEGVALQT QWETLHFLRA LGFPVNRDAR RFERFEEALA YCREWMTRRD ELEYEVDGVV
VKIDSFAQQA ELGVVGRDPR WAIAFKFPAR EAVSRLLDIV VNVGRTGVIT PNAVIEPVNI
GGVTVRNASL HNADYIAERD IRIGDYVIVK RAGDVIPHIV GPVVARRDGS ERVWQMPATC
PACGTPLERA EGEVAYRCPN FGICPAQITR RIEHFVSRSA MDIAGIGEKQ VQLFVERGWV
QDVADLYTLT PEHFHGIEGY GPKRIANLLN AIAESKDRPL HRLIVGLGIR YVGEVVAQIL
ADHFGSLDAL AAASADEIDD LEGIGPAIAA SVAEYFARPE SKALIAKLKR VGVRTEAKGP
AVAPKGDALA GKTFVITGTL PSMSREEAGA LIVAHGGRVS GSVSKKTDYL VVGSEPGGTK
VAKAQELGIP TLDEAGLLAL IGANDRSAPA ASNNNQNAAS ATSRGTMAEV QQLGLNLE
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