Gene Rcas_0820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0820 
Symbol 
ID5538286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1073819 
End bp1076167 
Gene Length2349 bp 
Protein Length782 aa 
Translation table11 
GC content62% 
IMG OID640892972 
Productiron permease FTR1 
Protein accessionYP_001430955 
Protein GI156740826 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0672] High-affinity Fe2+/Pb2+ permease 
TIGRFAM ID[TIGR00145] FTR1 family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.594209 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000623566 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGCTCAT GGCAGCGCTT CGCAGTGGCA GGCGTTCTGA TCGTCGCACT CCTGGCGCCA 
CACGTGGCGC TGGCGCAGTC GCCCGATCCC GGTCGGACGG CTGAACGGAT CCGTGCAGCG
CTCTTCCAGG CGCAGATGCA GATGCACACC GATCCGACCG GCGCGCGCGC GCGCATGGAG
GAGGCGCACG ACGCCTATCG CTTACTCGCA CCGACTATTG CCGCCTATGC GCCAGCCGCC
GATGCGCGCG CGCGCACCGG GTTCTCCGAC GCGAAGCAGG CTCTCACTAT CGGCGATATG
CCTGTCTTCG CCGATGCACG AGCGCGTATC TGGACAGCAG TGCTCGCCGC AGGGTACGAT
ATCGTCGTTG GGTCGCTTCG AGCGGGTGAT GCCGATACGG CACGCCAATG GCTGACGGTG
CGCGAGTTCC GCCATGCCAC ACGTTTCTCG CGTCCGAATG CCGATGCCGC TCGCGCCGTT
TACGATGCTG CCACGCAAAC CATCCCCATT GCCGATGCGA TCCCGGCCGT TCAGTCAGAC
CTGCTTGATA CCTATCAGGC GCGTCTGAAC GAAGCGTTAC AGACCTTGAT CGCCGCCGAT
CAGCAGGACT TCGCCATCCG GCGCGCCGAG GCTGCGGCGC TGGCTGAGGG CTATTTTACG
CTGCTTGCGC CGGCGTATGC CGAACAGCGC GGCGATGCTG CCGCCAATAC CGCGTATGCG
GCATTTGAAC GCCTGCGGCA GGCGGCGCTG GCAGGAGTTA ATCTCACCAT TCCTCTGGAA
GCCGTGCAAC AAACCCTGCG TGGATTTCGT GCAGCGCCGC TTAGCCCGGC GGAACAGAAG
CGCCGCACCG GTCAGATGCT GCGCTTCCTG CACCTTGTGC CGGTCGAGTA TGAGCGGGGT
GTGCGCAATG GACAGGTCAC GACCGAGCTC GAGATTCGTG AAGCGATCAC ATTCCACGCC
GGCGCATTCG CCGCCTTTAC CGATCTGCGC GATCTGTTGG AACAACGTCA TCCTGCATTG
ACGGAACGGG TCGCCGGGCA GTTCGATACG CTCGGCGCAA TGCTCGCCGG CGCCGGCAAT
CGCAGCGCTG TCGCCGACCC GACAGCAGTG AAGCGTGCAA CGACCGATCT GCTCTCCAAT
CTCACAACGC TGCTCCCACG TGAATGGCAA AAGCAGGATA GCAGCGCCGA TTTCGATGTC
ATCCGCACGG CGCTCGACCA GATGGAGCAG GCGGTTCGGG CTGGCGAGTA CGAATTGGCA
GAGTCGGCGC GCCTGGAAGC CTATGCCATC ATGGAGATCG GTCCAGAAGC AAAACTTATC
GCATTTGCGC CACAGTATAA ACCGCTTATC GAAGGGTATT TCTGGTATGG TCAGGGGAAC
CGCAAAGGTC TGGCGCACCT GATCGAACGG CGCGCCCCGC CTGCCGAGAT CGCCGCCACG
CGCATCGCGC TCGATCAGGC GCTGGCGGAA GCCGAACAAA CGCTGGCGGG AAAAAATGCT
CCGGGCGCGA TTGCAGCCAA TGCAGCGGTC ATCGTCTTCC GCGAAGGGTT GGAGGCGGTC
CTCATTCTGG CATCGTTGAT GGGCAGTCTC AAAATCGGCG CGCAGCGTCG TTTCCGCAAA
CCACTCTGGA TTGGCACAGC GCTGGCGTTT GTTGCGACGG TGGTAACCTG GGTGCTGGCC
CAGGAGGCGC TGATGGCGAT GGCGCGCTTT GGCGAAACGC TTGAGGCGAT TGTGTCGCTG
ATCGCCATTG CAGTCCTGCT GCTGATCACG AACTGGTTCT TCCACGATGT GTACTGGAAA
GACTGGATGG CAAACTTCCA TCAGCAGAAG AAACGCATTC TCAGCGGGCA GGCAGGGCAA
TGGCTCGGCT TGATGACGCT TGGCTTCGCC AGTATCTATC GTGAGGGGTT TGAGACCGTG
CTGTTTCTTC AGGCGCTGAC CCTGGAAGGC AGTGTCACTG TCGTGTCTGC CGGTGTGGCG
ATCGGTCTGA TTGCGACGCT GCTCGTTGGT CTGGCAGTGT TTGTGATGCA GGCGAAGTTG
CCGCACAAGA AAATGTTGAT CGTCACGGGG GTGCTGATCG GCGCCGTGCT GCTCCAGATG
GTGGGCAAGA CGGTCAATGT GACGCAGGTG ATCGGATGGC TGCCGATCCA TCCGATTCGC
TGGCTGGAGC TGCCGTACTG GGCAGGGTTC TGGTTTGGTC TGTATCCGAC ATGGGAAGGC
ATCGGACTCC AGGCGGCTGC GGCAATCTTC GTCATCGGCA GTTACTACCT GGCGGAATAT
ATGCAGCGGC GTGAGCGCCG GATGAAGCAC TCTGCGAGCA CCGCCGCCCA TCCTGTTCGT
GAAGTATGA
 
Protein sequence
MRSWQRFAVA GVLIVALLAP HVALAQSPDP GRTAERIRAA LFQAQMQMHT DPTGARARME 
EAHDAYRLLA PTIAAYAPAA DARARTGFSD AKQALTIGDM PVFADARARI WTAVLAAGYD
IVVGSLRAGD ADTARQWLTV REFRHATRFS RPNADAARAV YDAATQTIPI ADAIPAVQSD
LLDTYQARLN EALQTLIAAD QQDFAIRRAE AAALAEGYFT LLAPAYAEQR GDAAANTAYA
AFERLRQAAL AGVNLTIPLE AVQQTLRGFR AAPLSPAEQK RRTGQMLRFL HLVPVEYERG
VRNGQVTTEL EIREAITFHA GAFAAFTDLR DLLEQRHPAL TERVAGQFDT LGAMLAGAGN
RSAVADPTAV KRATTDLLSN LTTLLPREWQ KQDSSADFDV IRTALDQMEQ AVRAGEYELA
ESARLEAYAI MEIGPEAKLI AFAPQYKPLI EGYFWYGQGN RKGLAHLIER RAPPAEIAAT
RIALDQALAE AEQTLAGKNA PGAIAANAAV IVFREGLEAV LILASLMGSL KIGAQRRFRK
PLWIGTALAF VATVVTWVLA QEALMAMARF GETLEAIVSL IAIAVLLLIT NWFFHDVYWK
DWMANFHQQK KRILSGQAGQ WLGLMTLGFA SIYREGFETV LFLQALTLEG SVTVVSAGVA
IGLIATLLVG LAVFVMQAKL PHKKMLIVTG VLIGAVLLQM VGKTVNVTQV IGWLPIHPIR
WLELPYWAGF WFGLYPTWEG IGLQAAAAIF VIGSYYLAEY MQRRERRMKH SASTAAHPVR
EV