| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0778 |
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| Symbol | |
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| ID | 5538244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1017886 |
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| End bp | 1018863 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640892931 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001430914 |
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| Protein GI | 156740785 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.909827 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTGGC ATGAGGTAGT AGTACTTGTA ACGGGAGGCA CGGGCTCATT CGGTAAAAAG
TTCGCCAAGA TAATGCTAGA GGATTATCAA CCTGAGAAGG TGATAATTTA CAGCCGAGAT
GAGCTAAAGC AACATGAGAT GCGAATAGCG GGGTTTGATC ATCCCTCTAT ACGTTATTTC
ATCGGTGATG TACGCGATTT AGCAAGACTA CGTCGTGCTA TGTATGGAGT GGACATCGTG
GTTCATGCGG CTGCATTGAA GCAAGTTCCA GCTTGCGAAT ATAATCCTAT CGAGGCGGTC
ATGACAAACA TTAACGGTGC AAGAAATGTT ATTGATGCTG CCATCGATAT GGGCGTAAAA
AAGGTTGTGG CTATAAGTAC AGATAAGGCG GTAAATCCCG TGAATCTTTA TGGTGCCACC
AAGCTTTGTG CTGAAAAACT GTTTATTCAA AGCAACTCCT ATTCAGGCAG TACCGGAACT
CGCTTCAGTT GTGTACGCTA TGGTAACGTA GTTGGAAGCA GTGGTAGCGT AATCCCTCTT
TTCCGAGAGC AACGGCGATC TGGTCGTATT ACCGTGACTG ATCCGAGAAT GACACGTTTT
TGGATTACAT TAGATCAAGG CGTACGATTT GTTATTCGTT GCATTGAGCA AATGCATGGA
GGGGAAGTGT TTGTTCCTAA GATTCCCAGT ATGAACATTA TGGACCTAGC AAAAGCAATA
GCACCGGATT GCGTGGTGGA GTCCATCGGG ATTAGGCCCG GCGAGAAACT CCACGAAGTA
TTAATTTCTG AAGATGAAGC ACGTCATACG TTAGAACTTG AAGATATGTA TGTTGTTCAG
CCAAGATATC CATGGTGGCA GGTTAAGGAC TGGGAAGGAG GAAAGCCACT CCCTGAGGGT
TTCCGGTATG CTAGTAACAC AAACAGTCAG TGGCTCTCGG TAAGTGAGCT ACGAGTATTA
GCAGAGGACT TAATATGA
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| Protein sequence | MNWHEVVVLV TGGTGSFGKK FAKIMLEDYQ PEKVIIYSRD ELKQHEMRIA GFDHPSIRYF
IGDVRDLARL RRAMYGVDIV VHAAALKQVP ACEYNPIEAV MTNINGARNV IDAAIDMGVK
KVVAISTDKA VNPVNLYGAT KLCAEKLFIQ SNSYSGSTGT RFSCVRYGNV VGSSGSVIPL
FREQRRSGRI TVTDPRMTRF WITLDQGVRF VIRCIEQMHG GEVFVPKIPS MNIMDLAKAI
APDCVVESIG IRPGEKLHEV LISEDEARHT LELEDMYVVQ PRYPWWQVKD WEGGKPLPEG
FRYASNTNSQ WLSVSELRVL AEDLI
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