| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0709 |
|---|
| Symbol | |
|---|
| ID | 5538174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 932092 |
|---|
| End bp | 933087 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640892865 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001430849 |
|---|
| Protein GI | 156740720 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.232059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.177035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTTC TCGTATACGA TGCTCACTCC TACGACCGGA CGTTTCTGGA CGCCGCCAAT
CAGGGGCGGC ACCGTCTGAC GTATACTGCT GCGCAGCTCG ACGTGCAGAC AGCGGCGCTG
GCGCAGGGGT TTCCGGCAAT CTGCTGCTTC GTGAACGATC AGGCGACGGC AGAGGTCATC
GAGCGCCTGG CGGCTGGCGG CACCCGCCTG ATCGCGCAGC GTTCTACCGG CTACAACAAT
ATTGATCTGA TTGCGGCGGA GCAGTATGGC ATCACCGCGA TGCGCGTCAG TTACTACTCA
CCCTACTCGG TTGCAGAGTT CGCCGTTGGG TTGCTGCAAA CGCTCAACCG GCGCATCCAT
CGCGCCTACA ACCGCACCCG CGAGTTCAAC TTCCGCCTTG CAGGACTGCT CGGACGTGAC
ATCCATGGAT CGACGGTCGG TGTGGTCGGC ACCGGCAAGA TCGGTGCGGT CTTTGCGAGC
ATTATGCATG GCTTTGGCTG TTCGCTGCTC GGCTACGATG TGACGCACAA TCCTGACTGC
CTGGCGCTGG GGATGCGCTA TGTTCCGCTT GAAGAACTGT TACGCGCGTC CGACATCGTG
AGCCTGCACG TGCCGCTGCT GCCGGAGACA TACCATATGA TCAACCGCGA GACGCTGGCG
CTGATGAAGC CGGACGCTTT TCTGATCAAC ACCAGTCGTG GTGGACTGAT CGACACCGAT
GCCCTGATCG AGACGTTGCG CGCCGGACGC ATTGCGGGGG TTGGGCTTGA TGTGTATGAA
GAGGAAGAAG GGGTGTTCTT CCACGACCTC TCCGACCGGG TGATCACCGA TGATACGCTG
GCTCGCCTGA TGACCTTCCC GAATGTGCTC GTCACAGGGC ATCAGGCATT CTTTACTCGT
GAGGCGATGA CGACAATTGC GGAGACAACG ATCCGCAACA TTACCGACTT CGAGGAAGGG
CGTGAGAATG AGAACATTCT GCGACCGAGG AGGTGA
|
|---|
| Protein sequence | MDVLVYDAHS YDRTFLDAAN QGRHRLTYTA AQLDVQTAAL AQGFPAICCF VNDQATAEVI
ERLAAGGTRL IAQRSTGYNN IDLIAAEQYG ITAMRVSYYS PYSVAEFAVG LLQTLNRRIH
RAYNRTREFN FRLAGLLGRD IHGSTVGVVG TGKIGAVFAS IMHGFGCSLL GYDVTHNPDC
LALGMRYVPL EELLRASDIV SLHVPLLPET YHMINRETLA LMKPDAFLIN TSRGGLIDTD
ALIETLRAGR IAGVGLDVYE EEEGVFFHDL SDRVITDDTL ARLMTFPNVL VTGHQAFFTR
EAMTTIAETT IRNITDFEEG RENENILRPR R
|
|---|
| |