| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0658 |
|---|
| Symbol | |
|---|
| ID | 5538121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 868398 |
|---|
| End bp | 870086 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640892815 |
|---|
| Product | glycosyltransferase |
|---|
| Protein accession | YP_001430801 |
|---|
| Protein GI | 156740672 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTC CTTCTTCGGC TGTTCCTCAG ATACACACAC GTGATCGCGC GCATACGCGG
CTACGCCATG CTGTTGCGGC TGTCGCTCTG GCAACGTTGA GTCTCTTGCT GCTGCTCACG
ACGGAACCGC AGATTGGATT GACCTGGGAT GAGCCGGCAT ACATTGTGGC AGCGCGCGCG
TATGTCGGTT GGTTTGAACG TCTGGCGGTC GATCCCGGTG GCGCCTTGCA ACCGGATGTT
ATCAGACGTT TCTGGGAGGC CAACCATGAA CATCCACCGC TCGACAAAAT CTGGTCGGGA
ATGGTATGGC AGTTTGCGCG CCACTTTCTC GACGACCTGC CGGCGCATCG ATTGGGGAAT
ATTCTTTTGA CCGCCATTGC GGTCGGCGTG TTGTACGGGA CAGTCACGAG TGGTTTTGGC
GGTTGGGCGG GGGTGGCGGC GGTCGTGGCG CTGATCACGA TGCCGCGTTT CTTCTTCCAT
GCGCATCTGG CGGCGCTCGA TGTGCCGGCG GCGGTTGCGT TTTTTCTGGT GACGGCGCTC
TTCTGGCATA CGCGCCGGCG CCGCAGTGTC GCCTGGGATG TGGCGCTCGG CGTGGCGTGG
GGTGCGGCGC TTGCAACAAA GATTAATGCG CTGTTTGTCC TTCCGCTGCT GCTGGTCTGG
ATACTGGCAT TCGCCCGTCG CGGCTTTCTG ATACGGCGCG TGATCGTTGC TGGGGGCATC
GGTCTGCCAA CGTTCATTGC GCTGTGGCCC TGGCTCTATC ACGACACGCT CGCGCGATTG
ATCGCCTACA TCCGCTTCAT AACGGTCGAT CACTGGAAGA TCGCGCAGTG GTATTTTGGT
GAAGCGTTGA TGCCGCCGCC GTGGCATTTC CCGTTCGTCA TGCTCGTTGC GGTCACGCCG
CTGGGGATCA CCTTTCTGGC GCTCGCCGGC GTCGGGCTCG GCATCGTTGC CATCCGTTCC
GATTCGTCGA TGCAACGCGA ACAGGGTGCA CAGATCGCGC TCTGGACGCT CGGCGCGCTC
GTGCCGCTGC TGGCGCTGAC GACCGGGCGA ACGATGGTGT ACGATAATGA GCGGTTGTTC
ATGCCAGCGT TTTTCTTCGT TGCTGCGTTG GCTGGCAGCG GTCTCGACGC AGTTGGGCGC
TGGCTGCGTC GTTGGTTCGA GTGGCGCAAA TGGCCGCACC TGGCGACGCC TGGCGTCGCG
CTGGCAGGCG CGTTGCTGTT TCTGCCGCAT CTGGTCATCG CAGCACAGAT GTACCCGCAC
CTGCTTTCCT ACTATTCCGA AGCCGTGGGA GGATTGCGCG GCGCCACGCG CATGGGGCTG
GAAACAACCT ACTGGTGTGA AACGTATGCT GTCGCGCTGC CATACATTAA CGCGCGCGCT
GCGCCTGGCG CTGTGGTGTG GGTAGAGGAC TGGAGCCACG ATGTGCTGCT GACATACCAG
TTCTTGGGCC GCCTGCGCCC TGATGTGCGT GTTGCGCTTG CGCCCGGCGC CGGATCGCTC
TTTAGCCGGT ATGGGTTGGA AGGAACGCCG GCCGACATTG CTGATGCTGA TTATGTTATC
GTCACGTATC GGCAGACTGG TTTTGCGGCG CATGCCAAGA TCGAACGCTG GATCGTCGGT
CGCCAACCGG TGCTGCGCCT GGAACGTTTC GGCGTCCCGC TGATGGAACT GTATGAGCAA
GAGCGCTGA
|
|---|
| Protein sequence | MTAPSSAVPQ IHTRDRAHTR LRHAVAAVAL ATLSLLLLLT TEPQIGLTWD EPAYIVAARA
YVGWFERLAV DPGGALQPDV IRRFWEANHE HPPLDKIWSG MVWQFARHFL DDLPAHRLGN
ILLTAIAVGV LYGTVTSGFG GWAGVAAVVA LITMPRFFFH AHLAALDVPA AVAFFLVTAL
FWHTRRRRSV AWDVALGVAW GAALATKINA LFVLPLLLVW ILAFARRGFL IRRVIVAGGI
GLPTFIALWP WLYHDTLARL IAYIRFITVD HWKIAQWYFG EALMPPPWHF PFVMLVAVTP
LGITFLALAG VGLGIVAIRS DSSMQREQGA QIALWTLGAL VPLLALTTGR TMVYDNERLF
MPAFFFVAAL AGSGLDAVGR WLRRWFEWRK WPHLATPGVA LAGALLFLPH LVIAAQMYPH
LLSYYSEAVG GLRGATRMGL ETTYWCETYA VALPYINARA APGAVVWVED WSHDVLLTYQ
FLGRLRPDVR VALAPGAGSL FSRYGLEGTP ADIADADYVI VTYRQTGFAA HAKIERWIVG
RQPVLRLERF GVPLMELYEQ ER
|
|---|
| |