Gene Rcas_0645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0645 
Symbol 
ID5538108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp847657 
End bp848592 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content64% 
IMG OID640892802 
Productcobalamin biosynthesis protein CobD 
Protein accessionYP_001430788 
Protein GI156740659 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1270] Cobalamin biosynthesis protein CobD/CbiB 
TIGRFAM ID[TIGR00380] cobalamin biosynthesis protein CobD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAAGA GCGGAATTAG GGTACATATC ACCACTCCTA TGCTCGCACA CAGAAGTCAG 
ACGCTGCTGC TCGCCCTTGC CGTCGATCTC GTCCTCGGCG ACCCGCCGAA TGCATGGCAT
CCAGTGGCGC TCATGGGGCA ATGGATGCGC CTTGGGGAGC GGCTGGCACC GCATGATGCC
GCCCAACGCC TTGTATGGGG CGGCGCATGG CTGGCTGGCG GCATAGCGTT GACCGGTTTC
GTGGCTGCCT TGCTGCCGCA ACATCCGGCG GTTCAGAGTG GTGTCGCCTC AATGCTGCTG
GCGTACCGGG GGCTTGATCG GGCGGTTGGC GAGGTGCAGG CGGCGCTGGA GCGCGGCGAT
CTGCCTGAAG CGCGGCGGGT GCTTGGCTGG CGCCTCGTCA GTCGCCCAAC CGACGACCTG
CGCGCCGATG AAGTAGCAGG TGCGGCAATC GAGTCGCTGG CAGAAAACCT GAGCGACAGC
CTCGTGGCGC CATCCCTGGC GTTCCTGATT GGCGGTCTGC CAGGGATGGC GATCTACCGT
CTATCGAACA CGGCGGATGC CATGTGGGGG TATCGCAACG AGCGCTACGA GTATCTGGGC
AAAGCAGCAG CGCGTCTCGA TGATATGCTC AATTTCCTGC CAGCGCGCCT GACGGCTGCG
CTGATCGTCG CTGCTGCACA GATCGTGTGT GGTCGAGGAA GCGGGGCAAG GCGGATTGTG
CGTCGTGACG CAGGTCGCAC TGCTTCGCCG AATGCGGGCT GGCCCATGGC GGCAATGGCG
GGCGCACTCG ATACAACATT GACGAAACGC GGGCACTATG TGCTGGGAGA TGGCTCACGC
CCGCCCGACG CCGCGATGAT TGGCGAAGCG CGTCGTATTG CGCATGTCGT GCTGGCGTTG
CTGGCGGGAG CAGTGGCGCT GGCGCGAAGA AGATGA
 
Protein sequence
MRKSGIRVHI TTPMLAHRSQ TLLLALAVDL VLGDPPNAWH PVALMGQWMR LGERLAPHDA 
AQRLVWGGAW LAGGIALTGF VAALLPQHPA VQSGVASMLL AYRGLDRAVG EVQAALERGD
LPEARRVLGW RLVSRPTDDL RADEVAGAAI ESLAENLSDS LVAPSLAFLI GGLPGMAIYR
LSNTADAMWG YRNERYEYLG KAAARLDDML NFLPARLTAA LIVAAAQIVC GRGSGARRIV
RRDAGRTASP NAGWPMAAMA GALDTTLTKR GHYVLGDGSR PPDAAMIGEA RRIAHVVLAL
LAGAVALARR R