| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0592 |
|---|
| Symbol | |
|---|
| ID | 5538055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 787965 |
|---|
| End bp | 789515 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640892753 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_001430739 |
|---|
| Protein GI | 156740610 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.597722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCTT CTGTACAGTC GGACATCCAG GACGGATTGA AAACGAGTAT TTGCGAAATT
GCGCGTCGTC TCTGTGTGGC GACGGATGCG AAGGCATGCT ATCTGGCGAT GCGTGAACGT
CCGACAGCGC CGCCTCGATT CATCGGCGCC GTCGGTGTGC AGGGCGATCC TCCCGACTGG
AATGAGATCG ATGGCGATCA TCTGGTGCGT CGAATAGGGC ATAAACGTGA ACTTGTTGTC
GCGGAACGTT CGATGCACGC GCTGTTGCTG GCGCTCCCCG CAAGCGGTCG CGATATTGGT
GTGGCAGTGT TGCTCTTCGA CAGCGAACCG CCTCCCGTCT CGGATGCCTT CGTTGCAGCA
GCGCAATTGG CCGGTCTTGC GCTGGAATCG GTCTGGCAGC TTGCCGCCCT GCACGATCAG
GCGGAGCAAC TGGCAGAGCG CACCCGTCTG CGTGAGATTC AGGTGAGCCG CAATCTCATT
CGCGGAGTGA TTGACAGTGT CCCTATGGGA CTGGTGCTGA TCGATCCGGT CGGGTACGTG
CTGGCAGCCA ATCGCGCGCT CGCCGAGCGC TTCGGTCTCG AGCCGGCAAT GCTGGTAGGA
CGGTTCTACG GCGACGTGCT TGGCGAATGG AGTGAGGCTG CAGCGGCCCG CACCTTCGCT
ACGCGCCAGC CGCAGCGCTT GCGCCGCACG CTGCAACGTC CCGGCGGCAG TGAGTCCCTG
ATCGAGATCG CCAGCATTCC GTTGTTTGAC GCCTCTGGCG CTGCGCATCA GGCTGTCGAG
GTATGGGAAG ACATCACTGA GCGGGTCGCG CTGCAAACAC AGCTTGTGCG TGCCGAGAAA
CTCGCTGCAA TCGGACACCT GGCAGCCAGC ATCGCTCACG AGGTCGGCAA CCCGCTTCAG
GCGATCCAGG GTTTTCTGGC ATTGTTCCTG GAACAGTGCC CGCCTGAAAC GCCGAATCAG
CACTTTCTGC AACTCGCCGA AGAAGAAATC GATCGGATTG TGCGCGTGCT GGAACGATTG
CGCGATCTCT ATCGCCCGCG CGCCGATGTT TTCACCCATG TGAATGTCAA TGAGTTGATC
GAGAGCGTCC TGCTGTTGAC CGGCAAACAA CTTGAGCGTT CGCGCATTCA AGTCCTGCGC
GAACTGGCGC CCGATCTGCC GGCTATTCAG GGAGTTGCCG ACCAACTGAA ACAGGTGCTG
CTCAACCTGG TGCTGAATGC GGCTGAGGCG ATGCCGAACG GCGGCACGCT GCACGTGCAA
ACGTATCGTT ACCATCCCAC GGAAGGGAAA GGCGCCGTTG CGATTGCCAT TACCGATACC
GGCATCGGTA TTTCGCCCGA TCAATTGACG CGCATCTTCG ACGGATTGCA TACCACGAAA
GAGCGAGGCA TGGGACTGGG GTTGTATACC AGCCGGGCAA TTATCGAGCG ACATCTGGGG
CGAATCAGCG CCCAAAGCAT TCCGGGCGAG GGTACGACCT TTGAGATCGT GTTACCGGTC
AGGCATGAGG AGATCCGTCA TGAGACAACC GGCGAAAATC CTGGTCGTTG A
|
|---|
| Protein sequence | MSASVQSDIQ DGLKTSICEI ARRLCVATDA KACYLAMRER PTAPPRFIGA VGVQGDPPDW
NEIDGDHLVR RIGHKRELVV AERSMHALLL ALPASGRDIG VAVLLFDSEP PPVSDAFVAA
AQLAGLALES VWQLAALHDQ AEQLAERTRL REIQVSRNLI RGVIDSVPMG LVLIDPVGYV
LAANRALAER FGLEPAMLVG RFYGDVLGEW SEAAAARTFA TRQPQRLRRT LQRPGGSESL
IEIASIPLFD ASGAAHQAVE VWEDITERVA LQTQLVRAEK LAAIGHLAAS IAHEVGNPLQ
AIQGFLALFL EQCPPETPNQ HFLQLAEEEI DRIVRVLERL RDLYRPRADV FTHVNVNELI
ESVLLLTGKQ LERSRIQVLR ELAPDLPAIQ GVADQLKQVL LNLVLNAAEA MPNGGTLHVQ
TYRYHPTEGK GAVAIAITDT GIGISPDQLT RIFDGLHTTK ERGMGLGLYT SRAIIERHLG
RISAQSIPGE GTTFEIVLPV RHEEIRHETT GENPGR
|
|---|
| |