Gene Rcas_0575 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0575 
Symbol 
ID5538038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp767419 
End bp767814 
Gene Length396 bp 
Protein Length131 aa 
Translation table11 
GC content59% 
IMG OID640892736 
ProductHEPN domain-containing protein 
Protein accessionYP_001430722 
Protein GI156740593 
COG category[S] Function unknown 
COG ID[COG2250] Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.973071 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.183085 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAAA GTAATCCCCT GGATTGGGTC GCCAAGGCTG AAGGCGACCT CGACATGGCG 
CGGCGCGCCC TGCGCGGTAA AATGCGGCAT ACCGATGCTG CCGTTTTTCA CGCGCAACAA
TGCGCCGAAA AATATCTCAA GGCGCTGCTC ATCGCCGGAA CAATCACATT TCCTAAGACA
CACGATCTGA CGATCCTGCG CCACCTCTGT ATCAGCAATG GCATTCCGGT CAATGTGGAC
GAGCCTGCGC TCGATTTCCT CTCTGGATAT GCGGTCAATG CGCGCTACCC TGGCGCTGAA
CCATCGCTGG AGGAAGCCCG CGAAGCCATC GCCATCGCCC GAAGCGTTCG CGCATTCGCG
CGCCGATGGT TGGGGATGAA AGGAGGGCGC CCATGA
 
Protein sequence
MKESNPLDWV AKAEGDLDMA RRALRGKMRH TDAAVFHAQQ CAEKYLKALL IAGTITFPKT 
HDLTILRHLC ISNGIPVNVD EPALDFLSGY AVNARYPGAE PSLEEAREAI AIARSVRAFA
RRWLGMKGGR P