| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0573 |
|---|
| Symbol | |
|---|
| ID | 5538036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 766690 |
|---|
| End bp | 767073 |
|---|
| Gene Length | 384 bp |
|---|
| Protein Length | 127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640892734 |
|---|
| Product | HEPN domain-containing protein |
|---|
| Protein accession | YP_001430720 |
|---|
| Protein GI | 156740591 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2250] Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.168783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.180351 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA ATGACCCGCT GGAATGGGCA AGATACGCCG AGCAGGACTG GCAGGTGGCG
ACATCGCTCA TACGACATAA ACATCCGCCA GTGGTCGCTA TCTGCTTCCG TGCGCAACAG
AGCGCTGAGA AATATTTGAA ATCTCTGCTT TTGCAGAAAT CTGTCGCCTT TCCCAGGACG
CACGACCTGC CCACCCTGAA CACTCTTTGT GAACAGGCAG GCATACAGAC CGGCGTATCA
CCTGGACAGC TGACCATCCT TTCCGACTAC GCGGTTACCA CCCGCTACCC TGGCGCTGAA
CCATCACTGG AAGAAGCCCG CGAAGCCATC GCCATCGCCC GAAGCGTTCG CGCATTCGCG
CGCCGATGGT TGGGAGTGAA ATAA
|
|---|
| Protein sequence | MSANDPLEWA RYAEQDWQVA TSLIRHKHPP VVAICFRAQQ SAEKYLKSLL LQKSVAFPRT
HDLPTLNTLC EQAGIQTGVS PGQLTILSDY AVTTRYPGAE PSLEEAREAI AIARSVRAFA
RRWLGVK
|
|---|
| |