Gene Rcas_0554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0554 
Symbol 
ID5538017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp735511 
End bp736560 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content64% 
IMG OID640892716 
Productalanine racemase domain-containing protein 
Protein accessionYP_001430702 
Protein GI156740573 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3616] Predicted amino acid aldolase or racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATCG ACGACCTTGA CACCCCGGCA GTTGTGATCG ATCTCGACCG CCTGGAGGCA 
AATATCGCCC GTTTTCAGGC GCATCTCGAC CGGCACGGCA TCGCCAACCG TCCCCACATC
AAGACGCACA AGATTCCGCA GATCGCACAG ATGCAGATAG CGGCTGGCGC TGTCGGCATT
ACCTGCCAGA AACTTGGCGA AGCGGAGGTC ATGGCGGACG CAGGCATCAC CGACATTTTT
CTGCCCTACA ACATTCTTGG CGCCGCCAAA CTGGAGCGCC TGGTCGCTCT TGCCCGCCGG
GTGCAGGTGA GCGTTACCGC CGATTCACCA GACGTCGTCA CCGGTCTGGG CGCAGCGATG
TCCGGCGCCG GTCTGGAACT GCCGGTGCTC GTTGAATGCG ACACCGGTAT GGGGCGGTGC
GGCGTGCAGA CCCCGGCGGA GGCAGCTGAA CTGGCGTTCC AGATCGCGCG CACGGCGGGA
TTGCGTTTTG GCGGATTGAT GACCTACCCA TCGAGTCCGG CGATCGGTCC GTTTATGCGC
GAAGCGGTAC GGCTTCTGCG CGAGCGTGGG CTTCCGGTCG AGCGGGTGAG CGGCGGCGGC
ACGGCAGGCA TGTGGCATGC GCACGAACAC CCGGAAGTGA CCGAGTATCG CGCCGGCATG
TACGTCTACG GCGACCGCTA TACCCTGCGC GCGGGCGCGC TGCGGCTCGA AGAGTGCGCA
ATGTCTGTTC TGACAACCGT CGTCAGCCGT CCGACGCCGG ATCGCGGCGT GATCGACGGC
GGCAGCAAGA CATTTTCGTC CGATCTGCTC GGTCTGGAGG GATACGGTCT CATCCTGGAA
TATCCCGAAG CCAGGATCGT TAACCTCTCT GAAGAGCATG GCGTGGTGGA TTTCAGCCAA
TGCGCGCAGA AACCTGCGAT TGGCGAAAGG GTGCGGGTGC TGCCGAACCA CTGCTGCGTC
GTGAGCAACC TGTTCGATGA AGTGATCGGC GCGCGACGCG GCGAGGTCGA AACCATCTGG
CGGGTGGCGG CGCGGGGCAC GGTGCGGTGA
 
Protein sequence
MRIDDLDTPA VVIDLDRLEA NIARFQAHLD RHGIANRPHI KTHKIPQIAQ MQIAAGAVGI 
TCQKLGEAEV MADAGITDIF LPYNILGAAK LERLVALARR VQVSVTADSP DVVTGLGAAM
SGAGLELPVL VECDTGMGRC GVQTPAEAAE LAFQIARTAG LRFGGLMTYP SSPAIGPFMR
EAVRLLRERG LPVERVSGGG TAGMWHAHEH PEVTEYRAGM YVYGDRYTLR AGALRLEECA
MSVLTTVVSR PTPDRGVIDG GSKTFSSDLL GLEGYGLILE YPEARIVNLS EEHGVVDFSQ
CAQKPAIGER VRVLPNHCCV VSNLFDEVIG ARRGEVETIW RVAARGTVR