| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0509 |
|---|
| Symbol | |
|---|
| ID | 5537972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 661981 |
|---|
| End bp | 663885 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640892671 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430657 |
|---|
| Protein GI | 156740528 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5542] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTTG ATCGACTTCT CTGGCGAGGT GCGTTCTTCA TTCGAGGTTC GATAGCAATC
GGCGCGGCGA TGGTCGCTGC CATCGTTGCG CTGTTCATGC TCCCTGTGCG TGCTGTGTAC
GACGTTGGCA GTCAGTTCGC GCCGATTTCC AGCCTCTATG CTCCAGAGCG CAGCGGATCG
ATATCTTACG CTTATTCACA GGGGCAGTCG CTCGTGCTGG CGCCGATGGT CGGCGCCGGC
ATGTATGGAG TGCTGGTGCG GATGGGTGGT CCTGGCGGGC ACGATCCTCT GCCGGCGCGC
GTTGAGATTG GCGGGTATAG CGCCGCCATT GGCGATGTTG GTTCAATACG GGTGTTTCGT
TTTCTGGCGC CTGCCAATGC CCACGGCGCG CTGGCAGTGC GTCTGACGAG CGCCACACTC
CAGCCGCCCG ACGATCCCCG TCGGTTGGGA TTGTTGCTCG ACTATCTGGA GATCCGTTCG
CTGGGATGGG CGCTGCCGTC GCTGTTTGCT GCCGGTGTTG CGCTGATACT GATTGGCAGC
GCCTGGATCG CCATGACCCT GCTCATCAAG GACCGTTGGT TGGCGCTGGC GCTGCTGACG
CTGATGGCGA TTGGAACGGT GTGGATCGTC TGGGGGTTGC GCGGCCAGAG CGCCTCACCG
CTTCTCTGGA GCGTTGCAGC GGCGGTTCTC GCGGCATTCG GCGCACTGGC GGCGCATCCG
CCGCCGTGGC TTGTTCGGCG AACCCTGGTC GCGGTTACGT TGCTGGTGGT CGCGTGGCGT
GTGGCGCTTT GGGTGGTTGC GTGGGTGGCA CTCCAGACCA ACGCCTGGCT CGCGCCGCTG
GCACAGTGGA TGGTCAGCGA TGCCAGAGCA TTGTCCACGC TGACTATCCC ATTGTTTGTG
CCGTTCGGTC AGGTGACCGG CGCAGCCTGG TCACAGTGGG ACTCGCGTTT GTACCTGAGC
ATTGTACTGC TGGGATACCA GCATCCGCCG GAAGAGTACG CAAACATGGC ATTTCTGCCG
CTCTATCCGC TCTTCATCAG GATGCTTCTG CCGCTCACCG GAGGCGATGC GGTCGCCGCT
GGCTTGATCG TCACGCATTG TGCACTGCTG GCTGCGGCGC TGATCATCGC TGATGTCGTC
AGACGCGATT TCGACGAACA GATTGCGTAT CGCGCCGTTG CAACGTTGTT GTGCTTTCCG
ACGTCTTTCT TTCTGGGAGC CGTGTACGCG GAGTCGCTGG CGCTGGCGCT GCTGGCATTA
ACGCTGTGGG GCTTGCGCCG CCAGCGCTGG ATGCTCGCCG GCGTCGCCGG GTTCTTCCTC
AGCCTGACGC GCCTGCCCGG TGTGTTGATG GCGCCGGTCA TTGCAGTGGC GCTTCTGGAA
CACGCCGGTT GGCGGCGACC ACCGCTGACG CGCGCGTATC TCGCGCCATT GTTGCCGCTG
GCGGGTCTCG GTTTGTTTAT GGCATATCAG TGGTGGCGCT TCGGGTCGCC GTTGCTGTTT
ATGCAGACTC AGCGCGACAT CTGGGATCAG CACCTGAGTC CGCCGTGGGT GCAACTCTCG
ATGATGATCG AAACGATTGC CGCCGGCGCC GATCACTGGA GTGGACGTTG GATGACACGC
ATTTTTCAAC TCCTCGTCTG GACGACGTTT GCCGGCTTAA CGGCGATGAC GCTGCGTCGC
CTGCCGCCGA TTTACGGGCT GACAGCCGTG ATGATGCTGG CGCCGGCGTA TCTGACGAAT
GTGTCGCATT CGCTGCCGCG CTATGTGCTG CTGGCGCTGC CCGCGTTCGT TGCTGCGGCA
GCGCTGATTG AACGTCGCCC CGTGCTGCTG ATGGCGACGC CTGTCGCGCT GGCGCTGCTG
GCATGGGCGA CTGCACTGTT TGTCAATGGG TTCTTTGTTG GGTGA
|
|---|
| Protein sequence | MRVDRLLWRG AFFIRGSIAI GAAMVAAIVA LFMLPVRAVY DVGSQFAPIS SLYAPERSGS
ISYAYSQGQS LVLAPMVGAG MYGVLVRMGG PGGHDPLPAR VEIGGYSAAI GDVGSIRVFR
FLAPANAHGA LAVRLTSATL QPPDDPRRLG LLLDYLEIRS LGWALPSLFA AGVALILIGS
AWIAMTLLIK DRWLALALLT LMAIGTVWIV WGLRGQSASP LLWSVAAAVL AAFGALAAHP
PPWLVRRTLV AVTLLVVAWR VALWVVAWVA LQTNAWLAPL AQWMVSDARA LSTLTIPLFV
PFGQVTGAAW SQWDSRLYLS IVLLGYQHPP EEYANMAFLP LYPLFIRMLL PLTGGDAVAA
GLIVTHCALL AAALIIADVV RRDFDEQIAY RAVATLLCFP TSFFLGAVYA ESLALALLAL
TLWGLRRQRW MLAGVAGFFL SLTRLPGVLM APVIAVALLE HAGWRRPPLT RAYLAPLLPL
AGLGLFMAYQ WWRFGSPLLF MQTQRDIWDQ HLSPPWVQLS MMIETIAAGA DHWSGRWMTR
IFQLLVWTTF AGLTAMTLRR LPPIYGLTAV MMLAPAYLTN VSHSLPRYVL LALPAFVAAA
ALIERRPVLL MATPVALALL AWATALFVNG FFVG
|
|---|
| |