Gene Rcas_0509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0509 
Symbol 
ID5537972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp661981 
End bp663885 
Gene Length1905 bp 
Protein Length634 aa 
Translation table11 
GC content63% 
IMG OID640892671 
Producthypothetical protein 
Protein accessionYP_001430657 
Protein GI156740528 
COG category[S] Function unknown 
COG ID[COG5542] Predicted integral membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGTTG ATCGACTTCT CTGGCGAGGT GCGTTCTTCA TTCGAGGTTC GATAGCAATC 
GGCGCGGCGA TGGTCGCTGC CATCGTTGCG CTGTTCATGC TCCCTGTGCG TGCTGTGTAC
GACGTTGGCA GTCAGTTCGC GCCGATTTCC AGCCTCTATG CTCCAGAGCG CAGCGGATCG
ATATCTTACG CTTATTCACA GGGGCAGTCG CTCGTGCTGG CGCCGATGGT CGGCGCCGGC
ATGTATGGAG TGCTGGTGCG GATGGGTGGT CCTGGCGGGC ACGATCCTCT GCCGGCGCGC
GTTGAGATTG GCGGGTATAG CGCCGCCATT GGCGATGTTG GTTCAATACG GGTGTTTCGT
TTTCTGGCGC CTGCCAATGC CCACGGCGCG CTGGCAGTGC GTCTGACGAG CGCCACACTC
CAGCCGCCCG ACGATCCCCG TCGGTTGGGA TTGTTGCTCG ACTATCTGGA GATCCGTTCG
CTGGGATGGG CGCTGCCGTC GCTGTTTGCT GCCGGTGTTG CGCTGATACT GATTGGCAGC
GCCTGGATCG CCATGACCCT GCTCATCAAG GACCGTTGGT TGGCGCTGGC GCTGCTGACG
CTGATGGCGA TTGGAACGGT GTGGATCGTC TGGGGGTTGC GCGGCCAGAG CGCCTCACCG
CTTCTCTGGA GCGTTGCAGC GGCGGTTCTC GCGGCATTCG GCGCACTGGC GGCGCATCCG
CCGCCGTGGC TTGTTCGGCG AACCCTGGTC GCGGTTACGT TGCTGGTGGT CGCGTGGCGT
GTGGCGCTTT GGGTGGTTGC GTGGGTGGCA CTCCAGACCA ACGCCTGGCT CGCGCCGCTG
GCACAGTGGA TGGTCAGCGA TGCCAGAGCA TTGTCCACGC TGACTATCCC ATTGTTTGTG
CCGTTCGGTC AGGTGACCGG CGCAGCCTGG TCACAGTGGG ACTCGCGTTT GTACCTGAGC
ATTGTACTGC TGGGATACCA GCATCCGCCG GAAGAGTACG CAAACATGGC ATTTCTGCCG
CTCTATCCGC TCTTCATCAG GATGCTTCTG CCGCTCACCG GAGGCGATGC GGTCGCCGCT
GGCTTGATCG TCACGCATTG TGCACTGCTG GCTGCGGCGC TGATCATCGC TGATGTCGTC
AGACGCGATT TCGACGAACA GATTGCGTAT CGCGCCGTTG CAACGTTGTT GTGCTTTCCG
ACGTCTTTCT TTCTGGGAGC CGTGTACGCG GAGTCGCTGG CGCTGGCGCT GCTGGCATTA
ACGCTGTGGG GCTTGCGCCG CCAGCGCTGG ATGCTCGCCG GCGTCGCCGG GTTCTTCCTC
AGCCTGACGC GCCTGCCCGG TGTGTTGATG GCGCCGGTCA TTGCAGTGGC GCTTCTGGAA
CACGCCGGTT GGCGGCGACC ACCGCTGACG CGCGCGTATC TCGCGCCATT GTTGCCGCTG
GCGGGTCTCG GTTTGTTTAT GGCATATCAG TGGTGGCGCT TCGGGTCGCC GTTGCTGTTT
ATGCAGACTC AGCGCGACAT CTGGGATCAG CACCTGAGTC CGCCGTGGGT GCAACTCTCG
ATGATGATCG AAACGATTGC CGCCGGCGCC GATCACTGGA GTGGACGTTG GATGACACGC
ATTTTTCAAC TCCTCGTCTG GACGACGTTT GCCGGCTTAA CGGCGATGAC GCTGCGTCGC
CTGCCGCCGA TTTACGGGCT GACAGCCGTG ATGATGCTGG CGCCGGCGTA TCTGACGAAT
GTGTCGCATT CGCTGCCGCG CTATGTGCTG CTGGCGCTGC CCGCGTTCGT TGCTGCGGCA
GCGCTGATTG AACGTCGCCC CGTGCTGCTG ATGGCGACGC CTGTCGCGCT GGCGCTGCTG
GCATGGGCGA CTGCACTGTT TGTCAATGGG TTCTTTGTTG GGTGA
 
Protein sequence
MRVDRLLWRG AFFIRGSIAI GAAMVAAIVA LFMLPVRAVY DVGSQFAPIS SLYAPERSGS 
ISYAYSQGQS LVLAPMVGAG MYGVLVRMGG PGGHDPLPAR VEIGGYSAAI GDVGSIRVFR
FLAPANAHGA LAVRLTSATL QPPDDPRRLG LLLDYLEIRS LGWALPSLFA AGVALILIGS
AWIAMTLLIK DRWLALALLT LMAIGTVWIV WGLRGQSASP LLWSVAAAVL AAFGALAAHP
PPWLVRRTLV AVTLLVVAWR VALWVVAWVA LQTNAWLAPL AQWMVSDARA LSTLTIPLFV
PFGQVTGAAW SQWDSRLYLS IVLLGYQHPP EEYANMAFLP LYPLFIRMLL PLTGGDAVAA
GLIVTHCALL AAALIIADVV RRDFDEQIAY RAVATLLCFP TSFFLGAVYA ESLALALLAL
TLWGLRRQRW MLAGVAGFFL SLTRLPGVLM APVIAVALLE HAGWRRPPLT RAYLAPLLPL
AGLGLFMAYQ WWRFGSPLLF MQTQRDIWDQ HLSPPWVQLS MMIETIAAGA DHWSGRWMTR
IFQLLVWTTF AGLTAMTLRR LPPIYGLTAV MMLAPAYLTN VSHSLPRYVL LALPAFVAAA
ALIERRPVLL MATPVALALL AWATALFVNG FFVG