Gene Rcas_0500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0500 
Symbol 
ID5537963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp644544 
End bp646052 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content65% 
IMG OID640892662 
Productsecretion protein HlyD family protein 
Protein accessionYP_001430648 
Protein GI156740519 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTTTC CTGTGTCCAG ATTCGTGGTC GGAGCGCTGG CGCTCCTTTT TCTGGCGGGA 
GGCGTTCTGA TTGCATCACA GCGGGTCTCG CCGTCGCTGA GCGCAGAAGC GTCAGCGGAG
AGCGCGCCGC CGCCGGTCCT GGCGCCAGTG GTGCAACCCA TTGTGGCGAA TGGGATTGTT
GCGCCGGTCA GTCATGTTGA TCTGCGTTTC GCTATGCCTG GAACCGTGCG TGAGGTGTTG
GTGCGCGAAG GCGATATGGT CCGCGCGGGT GATCCGTTAG CGCGCCTGGA TACGGATGAA
CTGGAGACAC GCATTGCGCA GGCGCGCGCC AATTTGTCGG CGGCGCAGGC ACACTACGAA
CTGCTGATGA GCGCTGCCAC ACCGGTTGAT ATTCAGCGCG CGCAGGCAGA ACTGACGCGC
GCCCAGGCGC GATTGCGCGA GGTGAGTAAC GCCGTTACCT CCCACACCAG AGCCGCTGCA
CAGTCCCGGC TCGATGCCGC GCGCGCTGCA CTCGCGCGCC TGGAAGCCGG ACCAGATCCG
GCGGATGTAC GGGCGCTGCG CGCCGAGCTG CGCCAGGCGG AAGCCGATCT CCAGGCCACC
CGTGATCGCC TGTCGCTCGA AAAGACGACG CTGCGGCTCC AGATGGAACA GGCGGCCAAT
CTGCTGCGCG AGCGGCAGAC CGAATACGCT CGCATTCGCG ACGAAAATCA GGCGCGATCC
GAACCACTGA CGTCCGATCA GCGCACCCGC GAGGTCACGG CGCGGCTGGC GATGGACAAC
GCCGAGAAGG CGCTCGAACA GGCGCGTGTG GCGTATGACG CGGCGGTGCA GGCGGAACGC
ACCGGCATTG CCGCCACAGA AGCGCGGGTC GATGCCATCA GAGCGCGTCT TGAGCGTCTG
CTGGCAGGTC CTGCTCCCGA TCAACTTGCC GCAGCGCGCG CCGCCGTCGC GCAGGCGGAG
GAGGACCTGG CGCGCCTTCA GGGAGAGCAG CGTGCCGCCG CAATCGAAGC AGCACAGGCG
GACGTCGCCA TTGCCGAAGC CGAACTGGAA CGCTTGCTGG CAGGGGCGCG GCCCGCTGAA
GCGGCGATGG CGCGCGCGCG GGTCGAGGAA GCGCAGGCGA CGCTCGAACA GGCTGAACGC
GCACTCGAAC GCGCCATCCT GCGCGCGCCA ATTGCAGGAA TTGTCGCAGC GCTCAATGTC
AAAGCCGGTG AGATTGCCGA TCCGCAGATT GTTGCCGTGC GCCTGGCAGA TGTGCGCGGC
TGGCGCATCG AAACAACCAA CCTGAGCGAA CTGAGCGTGA CACGCCTGCA TGAGGGCGCA
CCGGCGATCA TCCGGTTCAA TTCATTGCCC GACCTCGAAA TTTCCGGCAA AGTGTCCGGT
ATCAGACCAC TGGGAACCGG GCGGGAAGGT GATGCAACGC TGTACACCGT CATCATTACG
CCAGATCACA TCGATGCACG TTTGCGCTGG AATATGACGG CGCAGGTGCA GATTACGCCT
GATCGCTGA
 
Protein sequence
MPFPVSRFVV GALALLFLAG GVLIASQRVS PSLSAEASAE SAPPPVLAPV VQPIVANGIV 
APVSHVDLRF AMPGTVREVL VREGDMVRAG DPLARLDTDE LETRIAQARA NLSAAQAHYE
LLMSAATPVD IQRAQAELTR AQARLREVSN AVTSHTRAAA QSRLDAARAA LARLEAGPDP
ADVRALRAEL RQAEADLQAT RDRLSLEKTT LRLQMEQAAN LLRERQTEYA RIRDENQARS
EPLTSDQRTR EVTARLAMDN AEKALEQARV AYDAAVQAER TGIAATEARV DAIRARLERL
LAGPAPDQLA AARAAVAQAE EDLARLQGEQ RAAAIEAAQA DVAIAEAELE RLLAGARPAE
AAMARARVEE AQATLEQAER ALERAILRAP IAGIVAALNV KAGEIADPQI VAVRLADVRG
WRIETTNLSE LSVTRLHEGA PAIIRFNSLP DLEISGKVSG IRPLGTGREG DATLYTVIIT
PDHIDARLRW NMTAQVQITP DR