Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0500 |
Symbol | |
ID | 5537963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 644544 |
End bp | 646052 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640892662 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001430648 |
Protein GI | 156740519 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGTTTC CTGTGTCCAG ATTCGTGGTC GGAGCGCTGG CGCTCCTTTT TCTGGCGGGA GGCGTTCTGA TTGCATCACA GCGGGTCTCG CCGTCGCTGA GCGCAGAAGC GTCAGCGGAG AGCGCGCCGC CGCCGGTCCT GGCGCCAGTG GTGCAACCCA TTGTGGCGAA TGGGATTGTT GCGCCGGTCA GTCATGTTGA TCTGCGTTTC GCTATGCCTG GAACCGTGCG TGAGGTGTTG GTGCGCGAAG GCGATATGGT CCGCGCGGGT GATCCGTTAG CGCGCCTGGA TACGGATGAA CTGGAGACAC GCATTGCGCA GGCGCGCGCC AATTTGTCGG CGGCGCAGGC ACACTACGAA CTGCTGATGA GCGCTGCCAC ACCGGTTGAT ATTCAGCGCG CGCAGGCAGA ACTGACGCGC GCCCAGGCGC GATTGCGCGA GGTGAGTAAC GCCGTTACCT CCCACACCAG AGCCGCTGCA CAGTCCCGGC TCGATGCCGC GCGCGCTGCA CTCGCGCGCC TGGAAGCCGG ACCAGATCCG GCGGATGTAC GGGCGCTGCG CGCCGAGCTG CGCCAGGCGG AAGCCGATCT CCAGGCCACC CGTGATCGCC TGTCGCTCGA AAAGACGACG CTGCGGCTCC AGATGGAACA GGCGGCCAAT CTGCTGCGCG AGCGGCAGAC CGAATACGCT CGCATTCGCG ACGAAAATCA GGCGCGATCC GAACCACTGA CGTCCGATCA GCGCACCCGC GAGGTCACGG CGCGGCTGGC GATGGACAAC GCCGAGAAGG CGCTCGAACA GGCGCGTGTG GCGTATGACG CGGCGGTGCA GGCGGAACGC ACCGGCATTG CCGCCACAGA AGCGCGGGTC GATGCCATCA GAGCGCGTCT TGAGCGTCTG CTGGCAGGTC CTGCTCCCGA TCAACTTGCC GCAGCGCGCG CCGCCGTCGC GCAGGCGGAG GAGGACCTGG CGCGCCTTCA GGGAGAGCAG CGTGCCGCCG CAATCGAAGC AGCACAGGCG GACGTCGCCA TTGCCGAAGC CGAACTGGAA CGCTTGCTGG CAGGGGCGCG GCCCGCTGAA GCGGCGATGG CGCGCGCGCG GGTCGAGGAA GCGCAGGCGA CGCTCGAACA GGCTGAACGC GCACTCGAAC GCGCCATCCT GCGCGCGCCA ATTGCAGGAA TTGTCGCAGC GCTCAATGTC AAAGCCGGTG AGATTGCCGA TCCGCAGATT GTTGCCGTGC GCCTGGCAGA TGTGCGCGGC TGGCGCATCG AAACAACCAA CCTGAGCGAA CTGAGCGTGA CACGCCTGCA TGAGGGCGCA CCGGCGATCA TCCGGTTCAA TTCATTGCCC GACCTCGAAA TTTCCGGCAA AGTGTCCGGT ATCAGACCAC TGGGAACCGG GCGGGAAGGT GATGCAACGC TGTACACCGT CATCATTACG CCAGATCACA TCGATGCACG TTTGCGCTGG AATATGACGG CGCAGGTGCA GATTACGCCT GATCGCTGA
|
Protein sequence | MPFPVSRFVV GALALLFLAG GVLIASQRVS PSLSAEASAE SAPPPVLAPV VQPIVANGIV APVSHVDLRF AMPGTVREVL VREGDMVRAG DPLARLDTDE LETRIAQARA NLSAAQAHYE LLMSAATPVD IQRAQAELTR AQARLREVSN AVTSHTRAAA QSRLDAARAA LARLEAGPDP ADVRALRAEL RQAEADLQAT RDRLSLEKTT LRLQMEQAAN LLRERQTEYA RIRDENQARS EPLTSDQRTR EVTARLAMDN AEKALEQARV AYDAAVQAER TGIAATEARV DAIRARLERL LAGPAPDQLA AARAAVAQAE EDLARLQGEQ RAAAIEAAQA DVAIAEAELE RLLAGARPAE AAMARARVEE AQATLEQAER ALERAILRAP IAGIVAALNV KAGEIADPQI VAVRLADVRG WRIETTNLSE LSVTRLHEGA PAIIRFNSLP DLEISGKVSG IRPLGTGREG DATLYTVIIT PDHIDARLRW NMTAQVQITP DR
|
| |