| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0484 |
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| Symbol | |
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| ID | 5537947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 624289 |
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| End bp | 626235 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640892646 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001430632 |
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| Protein GI | 156740503 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.339951 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTT CGATGCCTGC GTTTCATTTC TATGGGATAG ATGCACTGGC GCTGATTATC
GCCGCGTTTC TCGGATATGC TTTGCGCCTC GAACGTCTCG ATCTGAGGGA ATACTGGGGG
GCGTATGCGC TGTTTACAGG CATAACCCTG ATCGTTGTCC CTTCGACATT TGCGATGGTT
GGCGTGTACG CACAGTACTG GCGCTATGCG TCGTTCTACG AGTTTAGCCT GCTGGCAGTT
GCGCTGGCGT TCGCCGGAAT CATGCTGACA GGTCTTGTTC TGCTCATGCG CGCGCTGTTC
CCGCACTTGC CGGTTGTGCC ATTGTCGGTT CCGCTGATTT TCACCATGCC CGCGATGGCG
CTGACGGCGC TGCCCCGCCT GAGCGTGCAG GCGCGCTTTC GCCCATCGTC GTTGCGTCAT
TCACAGCACA GCAGTAATCG GGTGCTGATC ATGGGCGCGG GCGAAGCGGG CGCAATGATT
GCGCACAGCC TACGCACTGC GCGACGAAAC ACCATCATCG TTGGCTTCGT CGACGACAAC
CCAGGCAAGC GCGGCGTGCG GATCAACGGC GCGTCGGTCC TGGGCAATCG GCACGATATT
CCGCGCCTGG TCGCCGATCA CCACGTCGAT GAGGTCATCA TTGCGATGCC GGGCGTTCCC
GGAAAAACGA TCCGCGACAT TGTGTCCATC TGCGAGCGGG CCGGCGTGCG CGCGAAAATC
ATCCCCGGAC TTGCCGAACT GGTTGATGGA CGCTTTAGTG TCAACCACAT CCGCGATGTG
CAGATCGAAG ACCTGCTCCG ACGCGAACCG ATCAGTACCG ATATGCAGGC GGTGAGCGCG
CTGATCCGTG GACGGCGCGT TATGGTCACC GGCGGCGGCG GTTCGATTGG TAGCGAAATC
TGCCGCCATG TGCTGCGCTA TGAACCGGCT GAACTGATCA TTCTCGGGCA CGGTGAGAAC
AGCGTCTTTG CTATTCACAA CGAGCTGCAA CAATGGCTGA ACAACGGCTG CAATGAATCC
GGCGTTCCGC GCAGCACTAC TCTTCTGCGC ACGGTCATCG CTGATATTCG CTTTACCGAA
CGGATCCATT CCGTATTCGA GCAGTACCGT CCAGAAATTG TGTTCCACGC TGCGGCGCAC
AAGCACGTGC CGCTCATGGA AGCCAACCCG GTCGAGGCGG TCACCAATAA TGTGCTCGGA
ACGCGCAACC TGCTCGATGC CTCGATTGTG ACCGGCGTCG AACGCTTCGT GATGATTTCG
ACCGATAAAG CCGTCAATCC GACCAGCATC ATGGGCAGCA GCAAGCGCGC TGCCGAGTTG
CTGGTGCATC ACGCCGCAAA ACGCAGTGGA CGGGCGTTCA TGGCGGTTCG TTTCGGCAAC
GTCCTCGGCA GTCGCGGCAG TGTGGTATGG ACGTTCAAAC AACAGATTGC AATCGGCGGA
CCGGTGACTG TCACCCATCC TGAAATGCGC CGCTATTTCA TGACCATCCC CGAAGCGGTG
CAACTGGTGT TGCAGGCGGC GGCGCTTGGT CAGGGCGGCG AGGTGTTCAC GCTCGACATG
GGCGAGCCGG TCAAAATCCT CGATCTGGCG CGCGACATGA TCGAACTCTC CGGGTTGCAG
GTCGGGCGCG ACATTGATAT TGCCTTCGTC GGGTTACGCC CAGGCGAAAA ACTCTACGAG
GAACTGTTCC TGCCCGGCGA AACGTATGAT CGCACCGGTC ACGAGAAAAT CTTCATCGCC
CGCCATGCCG GGCGACTCGT GCCGCCCGAT GTGCTAGCGC TCATCGCCGA TCTCGAAGAA
GCGGCGCTCG CGGACGACGC GCACCGCACT CAGCGCTTGC TGCGCCTTAT TGTGGAACGC
AGCCAGGCGA CATCCATCGA GATGCTGCAC ACTGATCGGG CGCAGGCGCG CCCCGATCTG
CGCGCGCTGA CGGCAGGGAG CGTATGA
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| Protein sequence | MARSMPAFHF YGIDALALII AAFLGYALRL ERLDLREYWG AYALFTGITL IVVPSTFAMV
GVYAQYWRYA SFYEFSLLAV ALAFAGIMLT GLVLLMRALF PHLPVVPLSV PLIFTMPAMA
LTALPRLSVQ ARFRPSSLRH SQHSSNRVLI MGAGEAGAMI AHSLRTARRN TIIVGFVDDN
PGKRGVRING ASVLGNRHDI PRLVADHHVD EVIIAMPGVP GKTIRDIVSI CERAGVRAKI
IPGLAELVDG RFSVNHIRDV QIEDLLRREP ISTDMQAVSA LIRGRRVMVT GGGGSIGSEI
CRHVLRYEPA ELIILGHGEN SVFAIHNELQ QWLNNGCNES GVPRSTTLLR TVIADIRFTE
RIHSVFEQYR PEIVFHAAAH KHVPLMEANP VEAVTNNVLG TRNLLDASIV TGVERFVMIS
TDKAVNPTSI MGSSKRAAEL LVHHAAKRSG RAFMAVRFGN VLGSRGSVVW TFKQQIAIGG
PVTVTHPEMR RYFMTIPEAV QLVLQAAALG QGGEVFTLDM GEPVKILDLA RDMIELSGLQ
VGRDIDIAFV GLRPGEKLYE ELFLPGETYD RTGHEKIFIA RHAGRLVPPD VLALIADLEE
AALADDAHRT QRLLRLIVER SQATSIEMLH TDRAQARPDL RALTAGSV
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