| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0477 |
|---|
| Symbol | |
|---|
| ID | 5537940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 617325 |
|---|
| End bp | 618542 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640892639 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_001430625 |
|---|
| Protein GI | 156740496 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.514713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGCT TGCCGGCAAA AGCCACACGT CAGCACACCA AAAATCATAA CAGCCGCCTG
GTCCTGCGCA TCATCTATGA GGATGAAGCG ATCAGTCGCG CCGATATTGC GCGGAAAACC
GGATTGACTC GCACAACGGT CTCGACCGTA GTCGGTGAAT TGATCGAGCA GGGGCTGATT
GAAGAAACCG GTGCAGGTCA ATCGTCGGGC GGGCGCCTGC CGATCCTGTT GCGTGTTGCG
CACGAAGCGC ACAGTGTGCT GGCATTGAGT TTCGAGGATA CGCAGATCGT TGGAGCGCTG
GTCGATATGC GCGGCAGCAT TCAGCGGCGG GTCAGTCTGT CGCTGTACGG TTATCGACCG
GAAGAGTTGC CCGGCTACCT GACTCGACTG ATCGAGGAGT TGCGCGCCGA CGTCACCACT
CATATTCTCG GCATTGGGCT GAGTATGCCG GGGATTGTCG ATCCGGTGCA TGGCATTGTG
CGACGCGCCG TTAATTTTGG TCTCGTCGAT GTTCCGCTCC GTCAGTGGCT CCAGGATCAG
TACCGGTTGC CGGTCTATCT CGACAATGCC GCACATCTGG CGGCGCTGGC TGAGTACATG
TTCGGCGACG GCGCCGCGAG CGGCAACCTG GTTGTGATCA GCATCGGCGT CGGTATCGGC
GCCGGCATGG TTCTCAACGG AGCATTGTTT CCGGGTGATG GATTCGGCGC CGGCGAAATC
GGTCATGTCG TCGTTGCCGA CAATGGCATC CGCTGCAATT GCGGCAATGT CGGCTGTCTG
GAAACCGTCG CCAGCGTCCC GGCCATTGTG CGCGCCGCGC GGAAATGGTT CAGCGACCCG
TCATCGCGCC TGCGCGCGTT GGCGCCTTCG GCGGCTGCGG TCGATCTCGA TATCGTTCAC
CGGGCGCTCG AAGCGGGAGA CCCGGGTGTC GCGTCGGTTG TCGAGGAAGC AGGGTATTAC
CTGGGGATCG CCATCGCGCA TATCGTCGGA TTGCTCAACG TCGAGCGCAT CGTGGTGACC
GGCGCCGTCG CTGTGCTTGG GTTGCCATTC CTCGAAGCGG TCAAGGTGTC GCTGGCGCGT
CATGCCCTGG CGCCCCTGGC GGCGATGACG AAGGTGGAAC TGATTCCAGA ACGGAGTGAT
GCCGTTCTGC TTGGCATCAC GGCGATGGTG CTTGATCAGG AACTGGGATT GCTGCACACC
CGCGTTCGGC TGTCGTAA
|
|---|
| Protein sequence | MKGLPAKATR QHTKNHNSRL VLRIIYEDEA ISRADIARKT GLTRTTVSTV VGELIEQGLI
EETGAGQSSG GRLPILLRVA HEAHSVLALS FEDTQIVGAL VDMRGSIQRR VSLSLYGYRP
EELPGYLTRL IEELRADVTT HILGIGLSMP GIVDPVHGIV RRAVNFGLVD VPLRQWLQDQ
YRLPVYLDNA AHLAALAEYM FGDGAASGNL VVISIGVGIG AGMVLNGALF PGDGFGAGEI
GHVVVADNGI RCNCGNVGCL ETVASVPAIV RAARKWFSDP SSRLRALAPS AAAVDLDIVH
RALEAGDPGV ASVVEEAGYY LGIAIAHIVG LLNVERIVVT GAVAVLGLPF LEAVKVSLAR
HALAPLAAMT KVELIPERSD AVLLGITAMV LDQELGLLHT RVRLS
|
|---|
| |